Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38263 * 119.99690 * 2 1 4 4 C 1.38220 * 120.01598 * 179.72464 * 3 2 1 5 5 C 1.38236 * 120.01219 * 0.54873 * 4 3 2 6 6 C 1.50704 * 120.00627 * 179.75038 * 5 4 3 7 7 N 1.46497 * 109.46974 * 259.72305 * 6 5 4 8 8 C 1.46498 * 120.00118 * 269.99785 * 7 6 5 9 9 C 1.36943 * 119.99925 * 89.99737 * 7 6 5 10 10 H 1.07997 * 120.00083 * 22.33137 * 9 7 6 11 11 C 1.38809 * 119.99950 * 202.32074 * 9 7 6 12 12 N 1.31623 * 119.99861 * 14.35346 * 11 9 7 13 13 Si 1.86798 * 120.00206 * 194.34543 * 11 9 7 14 14 H 1.48507 * 109.47064 * 90.00544 * 13 11 9 15 15 H 1.48497 * 109.47452 * 210.00266 * 13 11 9 16 16 H 1.48500 * 109.47247 * 330.00786 * 13 11 9 17 17 C 1.38307 * 119.98936 * 359.47151 * 5 4 3 18 18 Br 1.89106 * 120.00774 * 180.27533 * 17 5 4 19 19 C 1.38197 * 119.99035 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47839 * 269.98101 * 1 2 3 21 21 H 1.09000 * 109.47044 * 29.97967 * 1 2 3 22 22 H 1.09003 * 109.47581 * 149.97599 * 1 2 3 23 23 H 1.07996 * 119.98815 * 359.97438 * 3 2 1 24 24 H 1.07999 * 119.99346 * 180.29670 * 4 3 2 25 25 H 1.08997 * 109.47306 * 139.71879 * 6 5 4 26 26 H 1.09007 * 109.46720 * 19.72080 * 6 5 4 27 27 H 1.09002 * 109.47084 * 89.77263 * 8 7 6 28 28 H 1.09005 * 109.47324 * 209.77037 * 8 7 6 29 29 H 1.09003 * 109.46991 * 329.76575 * 8 7 6 30 30 H 0.97004 * 119.99770 * 179.97438 * 12 11 9 31 31 H 1.07997 * 120.00906 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1979 0.0058 5 6 4.2723 0.0012 0.0000 6 6 5.7793 0.0019 0.0006 7 7 6.2682 -0.2375 -1.3594 8 6 6.5133 -1.6067 -1.8194 9 6 6.4962 0.8186 -2.2009 10 1 6.6709 1.8041 -1.7954 11 6 6.5031 0.6222 -3.5750 12 7 6.0197 -0.4917 -4.0830 13 14 7.1981 1.9388 -4.7032 14 1 8.6484 1.6970 -4.9116 15 1 6.4956 1.8916 -6.0107 16 1 7.0029 3.2745 -4.0843 17 6 3.5812 -1.1969 -0.0004 18 35 4.5272 -2.8343 -0.0003 19 6 2.1978 -1.1969 -0.0005 20 1 -0.3635 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6580 2.1326 -0.0004 24 1 4.1200 2.1334 0.0106 25 1 6.1428 -0.7852 0.6612 26 1 6.1420 0.9678 0.3524 27 1 5.6041 -2.0076 -2.2675 28 1 7.3127 -1.6035 -2.5604 29 1 6.8054 -2.2277 -0.9725 30 1 6.0241 -0.6287 -5.0433 31 1 1.6578 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095982647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 33.125022 kcal Electronic energy + Delta-G solvation = -14943.184471 eV Core-core repulsion = 12463.850298 eV Total energy + Delta-G solvation = -2479.334173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.38564 -37.46291 -34.49676 -32.99799 -32.61387 -30.18506 -29.23047 -27.86898 -25.94643 -23.44208 -23.14526 -21.38278 -18.69468 -17.25052 -16.70006 -16.46583 -15.87195 -15.60424 -15.13849 -14.54207 -14.46151 -14.29118 -13.53151 -13.29101 -13.08574 -12.93606 -12.80399 -12.68095 -12.36602 -12.12015 -12.01248 -11.87166 -11.77382 -11.44784 -10.72928 -10.45100 -9.61941 -9.32844 -8.74652 -7.81666 -5.27108 0.29986 0.46570 0.85660 1.46056 1.47876 1.55825 2.50777 2.76121 3.33546 3.88590 3.92057 3.97776 4.16249 4.33350 4.44635 4.64643 4.72355 4.88248 4.90328 4.98055 4.98918 5.05698 5.30152 5.34151 5.42154 5.61784 5.65427 5.68635 5.81004 6.06442 6.33415 7.15909 7.86755 8.32852 9.22247 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.008395 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.110179 B = 3334.520172 C = 4278.579024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.115 4.115 5 C -0.084 4.084 6 C 0.174 3.826 7 N -0.600 5.600 8 C 0.180 3.820 9 C -0.260 4.260 10 H 0.074 0.926 11 C -0.051 4.051 12 N -0.933 5.933 13 Si 0.966 3.034 14 H -0.287 1.287 15 H -0.298 1.298 16 H -0.266 1.266 17 C -0.093 4.093 18 Br -0.059 7.059 19 C -0.107 4.107 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.129 0.871 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.246 0.754 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 -1.312 10.892 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.134 4.134 5 C -0.089 4.089 6 C 0.047 3.953 7 N -0.321 5.321 8 C 0.035 3.965 9 C -0.390 4.390 10 H 0.091 0.909 11 C -0.246 4.246 12 N -0.579 5.579 13 Si 0.795 3.205 14 H -0.214 1.214 15 H -0.225 1.225 16 H -0.191 1.191 17 C -0.173 4.173 18 Br 0.026 6.974 19 C -0.127 4.127 20 H 0.105 0.895 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.167 0.833 24 H 0.147 0.853 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.663 -1.996 10.727 13.932 hybrid contribution 0.325 0.713 -1.101 1.351 sum -8.338 -1.282 9.627 12.800 Atomic orbital electron populations 1.20779 0.88208 1.03606 1.03447 1.20202 0.97923 0.91981 1.00061 1.21414 0.93633 0.98829 0.98943 1.21182 0.94938 0.97178 1.00124 1.21007 0.99273 0.92242 0.96413 1.20146 0.87417 1.00551 0.87150 1.44193 1.73951 1.03286 1.10673 1.20794 0.97618 0.83766 0.94282 1.19557 1.41110 0.90586 0.87731 0.90856 1.25766 1.00935 0.99449 0.98500 1.70273 1.49020 1.27787 1.10832 0.85277 0.77686 0.79478 0.78077 1.21376 1.22488 1.19090 1.21785 0.95070 0.91273 1.09205 1.96538 1.76504 1.26773 1.97546 1.21135 0.91431 0.99470 1.00621 0.89499 0.90370 0.91098 0.83253 0.85302 0.91710 0.91909 0.97071 0.96959 0.95507 0.94466 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.01 71.23 0.71 -1.29 16 2 C -0.10 -2.85 5.88 -19.87 -0.12 -2.96 16 3 C -0.11 -3.25 9.70 22.27 0.22 -3.03 16 4 C -0.11 -4.05 9.67 22.26 0.22 -3.84 16 5 C -0.08 -3.36 5.47 -19.85 -0.11 -3.46 16 6 C 0.17 7.33 5.39 85.64 0.46 7.79 16 7 N -0.60 -30.71 2.91 -731.29 -2.13 -32.83 16 8 C 0.18 9.27 7.19 127.77 0.92 10.19 16 9 C -0.26 -14.33 9.66 84.03 0.81 -13.52 16 10 H 0.07 3.89 7.86 -2.91 -0.02 3.86 16 11 C -0.05 -2.90 5.03 84.86 0.43 -2.47 16 12 N -0.93 -56.34 10.78 21.65 0.23 -56.11 16 13 Si 0.97 45.59 29.58 68.60 2.03 47.62 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C -0.09 -3.53 6.22 22.31 0.14 -3.39 16 18 Br -0.06 -2.14 27.77 -20.37 -0.57 -2.71 16 19 C -0.11 -3.45 9.44 22.29 0.21 -3.24 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 22 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 23 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 24 H 0.13 4.28 8.03 -2.91 -0.02 4.26 16 25 H 0.06 2.56 6.90 -2.39 -0.02 2.54 16 26 H 0.06 2.50 7.89 -2.38 -0.02 2.48 16 27 H 0.01 0.61 6.71 -2.39 -0.02 0.59 16 28 H 0.01 0.67 6.97 -2.38 -0.02 0.65 16 29 H 0.03 1.21 6.55 -2.39 -0.02 1.20 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -64.76 275.67 4.57 -60.19 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.12 Total: 3.08 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.89 Total: -19.24 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.89 Total: -88.94 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 35 Polarization: -2.14 SS G_CDS: -0.57 Total: -2.71 kcal Total: -64.76 4.57 -60.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095982647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.312 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds