Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86799 * 120.00090 * 2 1 4 4 H 1.48497 * 109.47177 * 274.30960 * 3 2 1 5 5 H 1.48502 * 109.46989 * 34.30811 * 3 2 1 6 6 H 1.48499 * 109.47192 * 154.30610 * 3 2 1 7 7 C 1.39042 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99838 * 340.45777 * 7 2 1 9 9 N 1.37054 * 120.00418 * 160.46546 * 7 2 1 10 10 C 1.35652 * 124.74688 * 337.77301 * 9 7 2 11 11 C 1.37861 * 109.49137 * 180.02562 * 10 9 7 12 12 C 1.41727 * 126.84515 * 179.97438 * 11 10 9 13 13 O 1.21413 * 120.00048 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00175 * 0.02651 * 12 11 10 15 15 F 1.39898 * 109.47403 * 179.97438 * 14 12 11 16 16 F 1.39903 * 109.47217 * 59.99817 * 14 12 11 17 17 F 1.39902 * 109.47015 * 300.00228 * 14 12 11 18 18 C 1.47739 * 106.30873 * 0.24466 * 11 10 9 19 19 C 1.39126 * 133.84778 * 180.48285 * 18 11 10 20 20 C 1.37926 * 119.69043 * 179.63646 * 19 18 11 21 21 C 1.38643 * 120.25448 * 359.67726 * 20 19 18 22 22 C 1.37907 * 120.60696 * 0.02562 * 21 20 19 23 23 C 1.38377 * 124.75212 * 157.80396 * 9 7 2 24 24 H 0.97001 * 120.00194 * 359.97438 * 1 2 3 25 25 H 1.07995 * 125.25389 * 0.02607 * 10 9 7 26 26 H 1.08006 * 120.15726 * 359.31630 * 19 18 11 27 27 H 1.07998 * 119.86793 * 179.69801 * 20 19 18 28 28 H 1.07999 * 119.69890 * 180.02562 * 21 20 19 29 29 H 1.08000 * 120.02327 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4033 2.0990 -1.3961 5 1 1.4929 2.6246 0.7892 6 1 3.5870 1.4156 0.6070 7 6 2.0082 -1.2041 -0.0005 8 1 1.5148 -2.1127 0.3119 9 7 3.3195 -1.2382 -0.3974 10 6 3.9116 -0.3107 -1.1908 11 6 5.2321 -0.6522 -1.3911 12 6 6.1866 0.0591 -2.1603 13 8 7.3233 -0.3573 -2.2534 14 6 5.7907 1.3323 -2.8626 15 9 6.8941 1.8476 -3.5511 16 9 5.3516 2.2679 -1.9196 17 9 4.7589 1.0638 -3.7684 18 6 5.4522 -1.9108 -0.6495 19 6 6.5556 -2.7363 -0.4580 20 6 6.4341 -3.8702 0.3177 21 6 5.2208 -4.1843 0.9105 22 6 4.1213 -3.3709 0.7334 23 6 4.2248 -2.2238 -0.0455 24 1 -0.4850 0.8400 0.0004 25 1 3.4237 0.5606 -1.6020 26 1 7.5016 -2.4932 -0.9190 27 1 7.2875 -4.5157 0.4642 28 1 5.1358 -5.0742 1.5165 29 1 3.1806 -3.6248 1.1992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002492270.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -136.627930 kcal Electronic energy + Delta-G solvation = -22255.206655 eV Core-core repulsion = 18307.682142 eV Total energy + Delta-G solvation = -3947.524513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -51.36764 -48.87525 -48.85016 -42.56527 -40.01839 -38.23302 -35.46735 -33.50299 -31.09381 -30.79060 -28.73690 -27.04712 -24.55502 -23.52428 -22.47313 -21.45416 -19.84879 -19.78474 -19.56229 -19.06943 -17.78128 -17.30627 -16.94431 -16.33203 -16.05231 -15.74327 -15.66093 -15.32658 -15.29552 -15.15266 -14.99620 -14.98885 -14.92362 -14.67758 -14.67181 -14.38955 -13.69165 -13.26960 -13.07908 -12.51270 -12.44624 -12.03944 -11.93605 -11.32102 -11.05994 -10.65417 -9.31932 -9.11561 -8.95405 -6.64514 -0.47367 0.40476 0.78558 1.07931 1.18058 1.25420 1.30294 1.75035 1.83722 2.12911 2.33194 2.56791 2.86403 3.02475 3.17384 3.61293 3.88041 4.00055 4.23223 4.31826 4.49029 4.64810 4.74605 4.84626 5.02499 5.20820 5.45000 5.58014 5.67205 5.75515 5.85473 6.11187 6.16428 6.53423 6.81028 7.97588 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.010932 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.976264 B = 2560.686866 C = 4490.957461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.053 3.947 3 Si 0.902 3.098 4 H -0.244 1.244 5 H -0.255 1.255 6 H -0.253 1.253 7 C -0.357 4.357 8 H 0.120 0.880 9 N -0.252 5.252 10 C 0.050 3.950 11 C -0.342 4.342 12 C 0.391 3.609 13 O -0.465 6.465 14 C 0.425 3.575 15 F -0.167 7.167 16 F -0.174 7.174 17 F -0.169 7.169 18 C -0.056 4.056 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.100 4.100 23 C 0.015 3.985 24 H 0.304 0.696 25 H 0.164 0.836 26 H 0.126 0.874 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -1.278 0.001 6.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.162 4.162 3 Si 0.724 3.276 4 H -0.169 1.169 5 H -0.180 1.180 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.138 0.862 9 N 0.089 4.911 10 C -0.099 4.099 11 C -0.350 4.350 12 C 0.275 3.725 13 O -0.345 6.345 14 C 0.370 3.630 15 F -0.148 7.148 16 F -0.156 7.156 17 F -0.151 7.151 18 C -0.058 4.058 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.088 4.088 24 H 0.115 0.885 25 H 0.180 0.820 26 H 0.144 0.856 27 H 0.177 0.823 28 H 0.180 0.820 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.537 -1.439 0.097 6.694 hybrid contribution -0.512 1.431 -0.291 1.548 sum 6.025 -0.007 -0.194 6.028 Atomic orbital electron populations 1.69633 1.07251 1.31844 1.36786 1.25841 0.96009 1.01426 0.92933 0.86383 0.80441 0.79563 0.81206 1.16901 1.18027 1.17647 1.19709 0.83106 0.98899 1.46748 0.86218 1.40353 1.07935 1.15129 1.27709 1.22349 0.93619 0.96753 0.97139 1.18707 0.94564 1.03533 1.18215 1.19948 0.88643 0.83511 0.80443 1.90548 1.20872 1.65593 1.57519 1.21209 0.75506 0.87822 0.78509 1.93190 1.53058 1.88258 1.80274 1.93196 1.89682 1.67928 1.64748 1.93213 1.59515 1.93843 1.68496 1.18921 0.93877 0.94413 0.98635 1.20711 0.96810 0.94981 1.00218 1.21360 0.98800 0.96283 0.96765 1.21170 0.91412 1.00068 1.01094 1.20461 1.00787 0.92183 0.98531 1.18879 0.88810 0.95845 1.05254 0.88453 0.81964 0.85560 0.82275 0.81971 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.74 13.95 21.67 0.30 -39.44 15 2 C 0.05 2.51 5.44 84.97 0.46 2.97 15 3 Si 0.90 37.13 24.69 68.60 1.69 38.82 15 4 H -0.24 -9.52 6.68 99.48 0.66 -8.86 15 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 6 H -0.25 -10.88 6.74 99.48 0.67 -10.21 15 7 C -0.36 -17.25 10.29 84.07 0.87 -16.39 15 8 H 0.12 5.95 8.06 -2.91 -0.02 5.93 15 9 N -0.25 -11.70 2.72 -341.06 -0.93 -12.63 15 10 C 0.05 2.25 7.29 84.01 0.61 2.86 15 11 C -0.34 -14.94 6.05 -19.99 -0.12 -15.06 15 12 C 0.39 16.07 6.52 26.55 0.17 16.24 15 13 O -0.46 -19.79 16.22 -3.44 -0.06 -19.85 15 14 C 0.43 15.72 2.90 71.24 0.21 15.93 15 15 F -0.17 -5.82 16.92 44.97 0.76 -5.06 15 16 F -0.17 -6.39 16.70 44.97 0.75 -5.64 15 17 F -0.17 -6.12 16.70 44.97 0.75 -5.37 15 18 C -0.06 -2.36 6.23 -20.04 -0.12 -2.48 15 19 C -0.11 -3.86 9.79 22.41 0.22 -3.64 15 20 C -0.11 -3.18 10.04 22.29 0.22 -2.96 15 21 C -0.12 -3.28 10.01 22.29 0.22 -3.05 15 22 C -0.10 -3.53 9.92 22.38 0.22 -3.31 15 23 C 0.01 0.64 6.72 38.81 0.26 0.90 15 24 H 0.30 13.17 8.31 -92.71 -0.77 12.40 15 25 H 0.16 7.05 3.82 -2.91 -0.01 7.04 15 26 H 0.13 4.37 7.36 -2.91 -0.02 4.35 15 27 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 28 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 29 H 0.13 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -52.86 271.37 7.64 -45.21 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.15 Total: 11.94 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 3.22 Total: -7.99 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.63 Total: -52.07 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.06 Total: -19.85 kcal Atomic # 9 Polarization: -18.33 SS G_CDS: 2.26 Total: -16.06 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 1.69 Total: 38.82 kcal Total: -52.86 7.64 -45.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002492270.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.414 kcal (2) G-P(sol) polarization free energy of solvation -52.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds