Wall clock time and date at job start Wed Apr 15 2020 11:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99669 * 2 1 4 4 H 1.48500 * 109.47169 * 269.99915 * 3 2 1 5 5 H 1.48495 * 109.47176 * 29.99940 * 3 2 1 6 6 H 1.48506 * 109.46968 * 150.00291 * 3 2 1 7 7 C 1.38946 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99743 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00438 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34879 * 116.99964 * 180.02562 * 13 12 10 15 15 O 1.21613 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.46596 * 120.00313 * 180.26976 * 14 13 12 17 17 C 1.36130 * 125.65560 * 179.72216 * 16 14 13 18 18 C 1.41732 * 106.61773 * 180.02562 * 17 16 14 19 19 C 1.47354 * 126.77932 * 180.02562 * 18 17 16 20 20 O 1.21520 * 120.00088 * 359.97438 * 19 18 17 21 21 O 1.34748 * 119.99749 * 180.02562 * 19 18 17 22 22 C 1.37928 * 106.43943 * 0.02562 * 18 17 16 23 23 O 1.33455 * 108.34240 * 359.73603 * 22 18 17 24 24 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99844 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47259 * 59.99638 * 12 10 9 27 27 H 1.09004 * 109.46840 * 299.99418 * 12 10 9 28 28 H 1.08005 * 126.69272 * 359.97438 * 17 16 14 29 29 H 0.96703 * 117.00216 * 179.97438 * 21 19 18 30 30 H 1.08000 * 125.82429 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3820 -3.9161 -0.0002 15 8 8.1228 -2.9516 0.0003 16 6 7.9424 -5.2707 -0.0067 17 6 9.2678 -5.5811 -0.0123 18 6 9.3528 -6.9958 -0.0181 19 6 10.5838 -7.8057 -0.0248 20 8 11.6698 -7.2605 -0.0263 21 8 10.5051 -9.1509 -0.0303 22 6 8.0557 -7.4648 -0.0161 23 8 7.2301 -6.4163 -0.0038 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3632 0.0004 26 1 5.9241 -1.8565 0.8899 27 1 5.9241 -1.8566 -0.8901 28 1 10.0936 -4.8850 -0.0132 29 1 11.3397 -9.6395 -0.0349 30 1 7.7589 -8.5032 -0.0197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:57 Heat of formation + Delta-G solvation = -181.854579 kcal Electronic energy + Delta-G solvation = -20626.594546 eV Core-core repulsion = 16775.823585 eV Total energy + Delta-G solvation = -3850.770962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.066 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.33513 -40.41576 -40.23668 -38.37589 -36.54045 -36.41746 -34.10139 -33.76799 -31.83819 -31.06846 -28.69824 -25.35215 -24.84169 -23.77789 -21.52486 -20.93814 -19.70887 -19.04971 -18.61473 -18.20526 -17.24994 -17.20251 -16.44959 -16.28822 -16.16934 -15.76000 -15.54412 -14.95006 -14.19725 -14.01053 -13.77261 -13.64363 -13.14764 -13.00771 -12.58906 -12.38728 -12.24396 -12.07944 -11.29073 -11.21124 -11.06314 -10.69980 -10.66989 -10.65624 -10.07294 -9.70407 -9.36884 -8.71515 -8.32035 -6.41374 -3.94596 0.40059 0.83499 1.91876 2.30094 2.41472 2.67224 2.79344 2.97130 3.01959 3.11001 3.51367 3.99993 4.01698 4.09957 4.39347 4.75032 4.86705 5.07907 5.10894 5.17891 5.31690 5.47049 5.55297 5.61812 5.97654 6.17343 6.18917 7.38721 7.42156 7.51321 7.97735 8.44778 8.81129 9.27020 9.61924 10.70779 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.051180 B = 0.002838 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.955634 B = 9865.020566 C =10396.800955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.555 6.555 12 C 0.058 3.942 13 O -0.311 6.311 14 C 0.549 3.451 15 O -0.486 6.486 16 C -0.052 4.052 17 C -0.056 4.056 18 C -0.244 4.244 19 C 0.560 3.440 20 O -0.509 6.509 21 O -0.513 6.513 22 C 0.095 3.905 23 O -0.127 6.127 24 H 0.276 0.724 25 H 0.373 0.627 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.419 0.581 30 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.747 -12.906 -0.059 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.231 3.769 11 O -0.437 6.437 12 C -0.020 4.020 13 O -0.225 6.225 14 C 0.393 3.607 15 O -0.376 6.376 16 C -0.101 4.101 17 C -0.075 4.075 18 C -0.246 4.246 19 C 0.404 3.596 20 O -0.398 6.398 21 O -0.326 6.326 22 C 0.021 3.979 23 O -0.018 6.018 24 H 0.087 0.913 25 H 0.207 0.793 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.196 0.804 29 H 0.278 0.722 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 18.881 -12.782 -0.054 22.801 hybrid contribution 1.341 1.149 0.017 1.766 sum 20.222 -11.633 -0.037 23.330 Atomic orbital electron populations 1.69612 1.05667 1.27813 1.48211 1.25043 0.95528 0.98094 0.97214 0.86674 0.79865 0.83819 0.79114 1.19380 1.19936 1.19312 1.19423 0.78608 0.96907 1.48745 0.85975 1.42018 1.07655 1.05653 1.66460 1.19116 0.86755 0.85221 0.85770 1.90621 1.68922 1.30673 1.53482 1.22893 0.95495 0.79516 1.04079 1.86712 1.21246 1.31899 1.82605 1.19148 0.81826 0.86062 0.73705 1.90964 1.60912 1.39214 1.46472 1.20604 0.89410 0.84138 1.15944 1.21797 0.95548 0.93951 0.96205 1.19577 0.92057 0.93292 1.19703 1.19521 0.87703 0.80331 0.72043 1.90940 1.29550 1.73038 1.46225 1.84518 1.42475 1.19565 1.86036 1.25557 0.87123 0.92775 0.92488 1.84171 1.36575 1.13624 1.67465 0.91346 0.79335 0.88886 0.88883 0.80409 0.72162 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.87 13.96 55.50 0.77 -24.10 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.75 27.74 -169.99 -4.71 14.04 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 7 C -0.31 -8.52 10.16 -14.94 -0.15 -8.67 16 8 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 9 N -0.58 -13.44 5.09 -10.96 -0.06 -13.50 16 10 C 0.45 10.13 7.86 -10.99 -0.09 10.04 16 11 O -0.56 -15.08 16.08 -14.11 -0.23 -15.31 16 12 C 0.06 0.99 5.96 36.01 0.21 1.21 16 13 O -0.31 -5.50 9.77 -48.38 -0.47 -5.97 16 14 C 0.55 8.29 7.93 34.10 0.27 8.56 16 15 O -0.49 -7.73 16.64 -19.35 -0.32 -8.05 16 16 C -0.05 -0.65 7.14 -36.97 -0.26 -0.91 16 17 C -0.06 -0.60 10.41 -39.01 -0.41 -1.00 16 18 C -0.24 -2.21 6.16 -104.97 -0.65 -2.86 16 19 C 0.56 4.90 8.33 34.44 0.29 5.19 16 20 O -0.51 -6.10 17.72 -19.28 -0.34 -6.44 16 21 O -0.51 -2.62 13.27 -40.62 -0.54 -3.16 16 22 C 0.10 0.71 11.98 30.62 0.37 1.07 16 23 O -0.13 -1.44 10.61 5.81 0.06 -1.38 16 24 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.42 0.35 9.11 45.56 0.42 0.77 16 30 H 0.23 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 296.00 15.07 4.46 4.46 Total: -1.00 -36.30 296.00 -2.95 -39.25 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -1.07 Total: 6.41 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -0.51 Total: 13.74 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.72 Total: -37.59 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.84 Total: -40.31 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.04 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.30 -2.95 -39.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.602 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds