Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48491 * 109.47114 * 240.00108 * 3 2 1 5 5 H 1.48498 * 109.46788 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46800 * 120.00154 * 3 2 1 7 7 C 1.38954 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00214 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47322 * 180.02562 * 12 10 9 14 14 C 1.34814 * 117.00205 * 179.97438 * 13 12 10 15 15 O 1.21527 * 119.99708 * 0.02562 * 14 13 12 16 16 C 1.47178 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.36637 * 125.80333 * 179.97438 * 16 14 13 18 18 C 1.40030 * 106.92507 * 180.02562 * 17 16 14 19 19 C 1.36644 * 106.92565 * 0.02562 * 18 17 16 20 20 C 1.47173 * 125.80731 * 179.97438 * 19 18 17 21 21 O 1.21535 * 120.00047 * 0.02562 * 20 19 18 22 22 O 1.34814 * 120.00405 * 180.02562 * 20 19 18 23 23 O 1.34555 * 125.80453 * 0.30492 * 16 14 13 24 24 H 0.97004 * 120.00589 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00028 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.47097 * 59.99409 * 12 10 9 27 27 H 1.09000 * 109.46434 * 299.99801 * 12 10 9 28 28 H 1.07996 * 126.54016 * 0.04118 * 17 16 14 29 29 H 1.08000 * 126.53799 * 179.97438 * 18 17 16 30 30 H 0.96700 * 117.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0030 12 6 1.2439 -4.8630 -0.0022 13 8 2.1874 -5.9666 -0.0027 14 6 1.6722 -7.2124 -0.0027 15 8 0.4674 -7.3716 -0.0028 16 6 2.5688 -8.3795 -0.0037 17 6 2.1769 -9.6885 -0.0034 18 6 3.3434 -10.4632 -0.0041 19 6 4.3980 -9.5944 -0.0043 20 6 5.8215 -9.9681 -0.0045 21 8 6.1420 -11.1404 -0.0050 22 8 6.7700 -9.0101 -0.0042 23 8 3.9137 -8.3390 0.0011 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6168 -4.9201 -0.8919 27 1 0.6176 -4.9212 0.8881 28 1 1.1613 -10.0556 -0.0029 29 1 3.3989 -11.5418 -0.0037 30 1 7.6912 -9.3042 -0.0047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -183.475056 kcal Electronic energy + Delta-G solvation = -20747.945760 eV Core-core repulsion = 16897.104529 eV Total energy + Delta-G solvation = -3850.841231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.066 amu Computer time = -0.02 seconds Orbital eigenvalues (eV) -43.27979 -40.48165 -40.20097 -38.19825 -36.64293 -36.39813 -34.04417 -33.63113 -31.45557 -31.18440 -28.60739 -25.95964 -24.58750 -23.06542 -21.74393 -20.89749 -19.66432 -19.10466 -18.42462 -18.12577 -17.74654 -17.27509 -16.72006 -16.36942 -15.76028 -15.53684 -14.69714 -14.27301 -14.07741 -14.04403 -13.85796 -13.63887 -13.49513 -13.11300 -12.46472 -12.18408 -12.06832 -11.64434 -11.50069 -11.13836 -11.03844 -10.63470 -10.59866 -10.50504 -10.31704 -9.62459 -9.38884 -8.57544 -8.11443 -6.52581 -3.94765 0.00050 1.26174 1.69617 2.29760 2.37196 2.57837 2.86023 3.13991 3.21768 3.26452 3.69315 4.05859 4.26166 4.34599 4.63492 4.86729 4.94273 5.00071 5.11286 5.28559 5.41483 5.59345 5.65642 5.87571 5.95267 6.22209 6.26420 7.33816 7.45414 7.47821 7.90473 8.44925 9.04192 9.35411 9.85246 10.64473 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.003147 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.953650 B = 8896.593610 C = 9874.402912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.436 3.564 11 O -0.573 6.573 12 C 0.060 3.940 13 O -0.309 6.309 14 C 0.545 3.455 15 O -0.479 6.479 16 C 0.001 3.999 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.028 4.028 20 C 0.574 3.426 21 O -0.489 6.489 22 O -0.495 6.495 23 O -0.118 6.118 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -18.615 -0.007 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.221 3.779 11 O -0.457 6.457 12 C -0.017 4.017 13 O -0.223 6.223 14 C 0.388 3.612 15 O -0.369 6.369 16 C -0.052 4.052 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.081 4.081 20 C 0.417 3.583 21 O -0.379 6.379 22 O -0.306 6.306 23 O -0.011 6.011 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.196 0.804 29 H 0.195 0.805 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.441 -18.334 -0.004 18.865 hybrid contribution 0.113 0.577 0.001 0.588 sum 4.554 -17.757 -0.003 18.332 Atomic orbital electron populations 1.69600 1.06011 1.28665 1.49455 1.25313 0.95688 0.99879 0.96773 0.85848 0.78759 0.80000 0.79242 1.19712 1.20852 1.19718 1.19691 0.93499 0.81705 1.48387 0.87603 1.41676 1.09371 1.03997 1.63737 1.19236 0.88354 0.83963 0.86353 1.90588 1.13321 1.86644 1.55113 1.22929 0.90659 0.84108 1.04043 1.86710 1.39997 1.13415 1.82173 1.19317 0.85405 0.82559 0.73963 1.90943 1.13631 1.86336 1.45951 1.21320 0.80375 0.94066 1.09454 1.22006 1.01299 0.89698 1.01958 1.21996 0.89365 1.01592 1.00863 1.21076 0.91936 0.82736 1.12359 1.18898 0.83797 0.82979 0.72588 1.91002 1.81458 1.18938 1.46466 1.84705 1.20783 1.40288 1.84856 1.84326 1.20006 1.28494 1.68316 0.91524 0.77112 0.88911 0.88925 0.80369 0.80536 0.71732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.74 13.05 55.50 0.72 -23.01 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 10.37 7.86 -10.99 -0.09 10.28 16 11 O -0.57 -15.91 16.08 -14.11 -0.23 -16.14 16 12 C 0.06 1.09 5.96 36.00 0.21 1.31 16 13 O -0.31 -5.76 9.77 -48.11 -0.47 -6.23 16 14 C 0.54 8.49 7.95 34.36 0.27 8.76 16 15 O -0.48 -7.66 16.65 -19.28 -0.32 -7.98 16 16 C 0.00 0.02 7.19 -36.53 -0.26 -0.25 16 17 C -0.13 -1.27 10.60 -39.49 -0.42 -1.69 16 18 C -0.12 -1.06 10.60 -39.49 -0.42 -1.48 16 19 C -0.03 -0.32 7.19 -36.53 -0.26 -0.58 16 20 C 0.57 5.93 8.33 34.36 0.29 6.22 16 21 O -0.49 -5.60 17.65 -19.29 -0.34 -5.94 16 22 O -0.49 -4.33 13.44 -42.22 -0.57 -4.90 16 23 O -0.12 -1.64 10.68 1.26 0.01 -1.63 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.42 1.33 9.11 45.56 0.42 1.74 16 LS Contribution 299.19 15.07 4.51 4.51 Total: -1.00 -34.24 299.19 -3.78 -38.03 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -1.11 Total: 6.82 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -0.92 Total: 14.72 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.67 Total: -36.75 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.91 Total: -42.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.24 -3.78 -38.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.446 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.02 seconds