Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48491 * 109.47114 * 240.00108 * 3 2 1 5 5 H 1.48498 * 109.46788 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46800 * 120.00154 * 3 2 1 7 7 C 1.38954 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00214 * 180.02562 * 10 9 7 13 13 O 1.45194 * 109.47322 * 180.02562 * 12 10 9 14 14 C 1.34814 * 117.00205 * 179.97438 * 13 12 10 15 15 O 1.21527 * 119.99708 * 0.02562 * 14 13 12 16 16 C 1.47178 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.36637 * 125.80333 * 179.97438 * 16 14 13 18 18 C 1.40030 * 106.92507 * 180.02562 * 17 16 14 19 19 C 1.36644 * 106.92565 * 0.02562 * 18 17 16 20 20 C 1.47173 * 125.80731 * 179.97438 * 19 18 17 21 21 O 1.21535 * 120.00047 * 0.02562 * 20 19 18 22 22 O 1.34814 * 120.00405 * 180.02562 * 20 19 18 23 23 O 1.34555 * 125.80453 * 0.30492 * 16 14 13 24 24 H 0.97004 * 120.00589 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00028 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.47097 * 59.99409 * 12 10 9 27 27 H 1.09000 * 109.46434 * 299.99801 * 12 10 9 28 28 H 1.07996 * 126.54016 * 0.04118 * 17 16 14 29 29 H 1.08000 * 126.53799 * 179.97438 * 18 17 16 30 30 H 0.96700 * 117.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2124 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0030 12 6 1.2439 -4.8630 -0.0022 13 8 2.1874 -5.9666 -0.0027 14 6 1.6722 -7.2124 -0.0027 15 8 0.4674 -7.3716 -0.0028 16 6 2.5688 -8.3795 -0.0037 17 6 2.1769 -9.6885 -0.0034 18 6 3.3434 -10.4632 -0.0041 19 6 4.3980 -9.5944 -0.0043 20 6 5.8215 -9.9681 -0.0045 21 8 6.1420 -11.1404 -0.0050 22 8 6.7700 -9.0101 -0.0042 23 8 3.9137 -8.3390 0.0011 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6168 -4.9201 -0.8919 27 1 0.6176 -4.9212 0.8881 28 1 1.1613 -10.0556 -0.0029 29 1 3.3989 -11.5418 -0.0037 30 1 7.6912 -9.3042 -0.0047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -208.616695 kcal Electronic energy + Delta-G solvation = -20749.035983 eV Core-core repulsion = 16897.104529 eV Total energy + Delta-G solvation = -3851.931454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.066 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.16152 -41.66380 -41.10368 -40.04450 -37.77146 -37.38956 -36.05755 -34.48284 -33.44029 -32.14730 -30.12942 -27.18442 -26.24724 -24.01546 -22.65795 -21.86797 -21.48268 -20.09933 -20.04039 -19.35867 -18.67423 -18.30590 -18.08838 -17.53431 -17.51320 -16.58004 -16.44092 -15.84913 -15.66965 -15.15502 -14.86445 -14.50890 -14.37465 -14.28786 -14.04840 -13.80540 -13.55731 -12.94593 -12.81455 -12.50019 -12.40289 -12.17549 -12.12010 -12.00792 -11.58632 -11.41314 -10.54924 -10.27718 -10.12943 -8.53109 -6.03816 -0.91912 0.40335 0.75743 1.27060 1.37211 1.43760 1.49444 1.54756 1.60872 1.85885 1.99639 2.29711 2.95750 3.12451 3.42987 3.51744 3.88955 3.94093 4.12669 4.13750 4.19815 4.20682 4.64115 4.93563 4.96020 5.19674 5.36258 5.42751 5.87337 6.26272 6.48078 6.73391 7.02003 7.38287 7.92452 8.63540 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.003147 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.953650 B = 8896.593610 C = 9874.402912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.341 4.341 8 H 0.083 0.917 9 N -0.555 5.555 10 C 0.433 3.567 11 O -0.620 6.620 12 C 0.071 3.929 13 O -0.337 6.337 14 C 0.549 3.451 15 O -0.487 6.487 16 C -0.036 4.036 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.042 4.042 20 C 0.580 3.420 21 O -0.502 6.502 22 O -0.501 6.501 23 O -0.148 6.148 24 H 0.282 0.718 25 H 0.402 0.598 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.207 0.793 29 H 0.210 0.790 30 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -19.827 -0.007 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.101 0.899 9 N -0.192 5.192 10 C 0.220 3.780 11 O -0.507 6.507 12 C -0.006 4.006 13 O -0.252 6.252 14 C 0.393 3.607 15 O -0.376 6.376 16 C -0.088 4.088 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.094 4.094 20 C 0.424 3.576 21 O -0.392 6.392 22 O -0.316 6.316 23 O -0.044 6.044 24 H 0.091 0.909 25 H 0.236 0.764 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.224 0.776 29 H 0.227 0.773 30 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 3.868 -19.564 -0.005 19.943 hybrid contribution 0.334 0.847 0.002 0.911 sum 4.202 -18.717 -0.003 19.183 Atomic orbital electron populations 1.69653 1.06893 1.29863 1.48920 1.26101 0.96579 1.02500 0.95544 0.84932 0.77784 0.76182 0.79127 1.19528 1.19286 1.19535 1.19687 0.92959 0.83426 1.50910 0.89867 1.41700 1.09603 1.04038 1.63873 1.20104 0.88074 0.85456 0.84351 1.90549 1.15634 1.87681 1.56818 1.22721 0.89786 0.81633 1.06448 1.86689 1.40828 1.14637 1.83037 1.19548 0.85853 0.81966 0.73310 1.90923 1.13853 1.86288 1.46570 1.21212 0.80291 0.94199 1.13110 1.22417 1.02798 0.88023 0.98418 1.22416 0.88028 1.02793 0.98774 1.21558 0.93008 0.82431 1.12368 1.18791 0.83803 0.82838 0.72205 1.90996 1.81642 1.19291 1.47291 1.84676 1.22327 1.40268 1.84342 1.84280 1.20497 1.30041 1.69550 0.90880 0.76366 0.86387 0.86404 0.77563 0.77282 0.69187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.90 13.05 21.66 0.28 -47.62 16 2 C -0.01 -0.32 5.50 84.93 0.47 0.15 16 3 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.92 16 9 N -0.55 -28.09 5.29 -306.98 -1.62 -29.71 16 10 C 0.43 21.05 7.86 87.66 0.69 21.74 16 11 O -0.62 -35.73 16.08 15.74 0.25 -35.48 16 12 C 0.07 2.57 5.96 71.23 0.42 2.99 16 13 O -0.34 -12.66 9.77 -50.27 -0.49 -13.16 16 14 C 0.55 16.82 7.95 70.17 0.56 17.37 16 15 O -0.49 -14.87 16.65 19.75 0.33 -14.54 16 16 C -0.04 -0.92 7.19 24.25 0.17 -0.75 16 17 C -0.10 -1.64 10.60 22.33 0.24 -1.40 16 18 C -0.10 -1.52 10.60 22.33 0.24 -1.29 16 19 C -0.04 -0.88 7.19 24.25 0.17 -0.71 16 20 C 0.58 11.32 8.33 70.17 0.58 11.90 16 21 O -0.50 -10.66 17.65 19.72 0.35 -10.31 16 22 O -0.50 -8.40 13.44 -55.90 -0.75 -9.15 16 23 O -0.15 -4.11 10.68 -4.51 -0.05 -4.16 16 24 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 26 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 27 H 0.12 3.66 8.14 -2.39 -0.02 3.65 16 28 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.44 2.32 9.11 -74.06 -0.67 1.64 16 Total: -1.00 -74.95 299.19 4.52 -70.43 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.16 Total: 18.14 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 4.36 Total: 31.78 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.34 Total: -77.33 kcal Atomic # 8 Polarization: -86.43 SS G_CDS: -0.36 Total: -86.79 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -74.95 4.52 -70.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.186 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds