Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38396 * 119.84736 * 2 1 4 4 C 1.37919 * 120.15306 * 179.97438 * 3 2 1 5 5 C 1.39662 * 119.84327 * 0.02562 * 4 3 2 6 6 C 1.47730 * 120.14864 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99889 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.36868 * 120.00143 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99846 * 359.97438 * 9 8 6 11 11 C 1.39051 * 120.00467 * 179.97438 * 9 8 6 12 12 N 1.31362 * 119.99284 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00358 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46821 * 90.00156 * 13 11 9 15 15 H 1.48498 * 109.47417 * 209.99995 * 13 11 9 16 16 H 1.48501 * 109.47254 * 330.00382 * 13 11 9 17 17 C 1.39626 * 119.69966 * 359.73600 * 5 4 3 18 18 C 1.37953 * 119.84444 * 0.51301 * 17 5 4 19 19 S 1.76203 * 119.92232 * 179.75207 * 18 17 5 20 20 C 1.81404 * 104.44838 * 114.72851 * 19 18 17 21 21 O 1.42100 * 104.28012 * 358.65826 * 19 18 17 22 22 O 1.42100 * 104.27885 * 230.79937 * 19 18 17 23 23 H 1.09003 * 109.47202 * 270.02282 * 1 2 3 24 24 H 1.09004 * 109.47117 * 30.02421 * 1 2 3 25 25 H 1.08994 * 109.47331 * 150.01862 * 1 2 3 26 26 H 1.08005 * 119.92404 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.07483 * 180.02562 * 4 3 2 28 28 H 0.97006 * 119.99700 * 359.97438 * 8 6 5 29 29 H 0.97004 * 119.99554 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.07682 * 180.28806 * 17 5 4 31 31 H 1.09002 * 109.47124 * 299.99881 * 20 19 18 32 32 H 1.09001 * 109.46975 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.47147 * 59.99966 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5750 1.2077 0.0005 5 6 4.2764 0.0001 0.0005 6 6 5.7537 0.0001 0.0005 7 8 6.3617 -1.0530 0.0001 8 7 6.4276 1.1672 0.0011 9 6 7.7963 1.1673 0.0016 10 1 8.3363 0.2319 0.0020 11 6 8.4916 2.3714 0.0016 12 7 7.8347 3.5090 0.0016 13 14 10.3595 2.3714 0.0030 14 1 10.8555 2.3708 -1.3967 15 1 10.8540 3.5842 0.7029 16 1 10.8540 1.1592 0.7039 17 6 3.5751 -1.2073 0.0056 18 6 2.1956 -1.1999 -0.0002 19 16 1.3085 -2.7224 -0.0004 20 6 0.4391 -2.7399 1.5916 21 8 2.3217 -3.7184 -0.0262 22 8 0.3845 -2.5894 -1.0718 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6520 2.1336 -0.0004 27 1 4.1112 2.1452 0.0010 28 1 5.9425 2.0073 0.0011 29 1 8.3197 4.3491 0.0020 30 1 4.1114 -2.1447 0.0103 31 1 1.1655 -2.6924 2.4028 32 1 -0.1421 -3.6580 1.6781 33 1 -0.2283 -1.8801 1.6506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195160710.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -79.171082 kcal Electronic energy + Delta-G solvation = -19741.638740 eV Core-core repulsion = 16473.906435 eV Total energy + Delta-G solvation = -3267.732305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.57844 -37.74745 -37.15578 -35.96884 -34.19793 -32.89407 -31.55143 -30.90214 -29.65518 -27.48661 -25.05123 -22.98060 -22.16957 -20.14937 -18.77720 -18.31644 -17.30579 -16.41941 -16.08923 -15.75944 -15.34126 -14.78212 -14.62881 -14.35251 -13.89832 -13.76149 -13.62955 -13.46528 -13.16405 -12.83306 -12.59819 -12.20949 -12.08553 -11.91612 -11.72528 -11.59413 -11.30238 -11.19500 -11.05775 -10.55987 -10.46632 -10.31203 -9.71392 -9.21402 -8.60623 -8.54684 -8.17030 -6.64898 -3.97049 0.01077 0.88870 1.32774 2.82378 3.05770 3.17478 3.23401 3.30362 3.78689 4.01488 4.08072 4.33255 4.57145 4.60156 4.74193 4.80052 4.95197 5.17338 5.19625 5.29519 5.39607 5.45553 5.58571 5.69088 5.84587 5.96179 6.13222 6.31494 6.48098 6.60495 6.98711 7.35299 7.86756 8.40617 8.97287 9.31293 9.87152 10.51846 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.004117 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.576572 B = 6799.028090 C = 7406.407828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.001 3.999 3 C -0.142 4.142 4 C -0.050 4.050 5 C -0.116 4.116 6 C 0.462 3.538 7 O -0.592 6.592 8 N -0.541 5.541 9 C -0.294 4.294 10 H 0.110 0.890 11 C 0.024 3.976 12 N -0.889 5.889 13 Si 0.937 3.063 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.266 1.266 17 C 0.022 3.978 18 C -0.666 4.666 19 S 2.502 3.498 20 C -0.655 4.655 21 O -0.936 6.936 22 O -0.939 6.939 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.393 0.607 29 H 0.277 0.723 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 -3.710 3.660 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 C -0.161 4.161 4 C -0.070 4.070 5 C -0.120 4.120 6 C 0.250 3.750 7 O -0.479 6.479 8 N -0.175 5.175 9 C -0.423 4.423 10 H 0.128 0.872 11 C -0.180 4.180 12 N -0.528 5.528 13 Si 0.763 3.237 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.191 1.191 17 C 0.002 3.998 18 C -0.753 4.753 19 S 2.683 3.317 20 C -0.805 4.805 21 O -0.933 6.933 22 O -0.936 6.936 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.149 0.851 27 H 0.153 0.847 28 H 0.228 0.772 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.227 -4.791 3.017 17.187 hybrid contribution 0.761 1.586 0.597 1.858 sum -15.466 -3.205 3.614 16.203 Atomic orbital electron populations 1.21644 0.91041 1.06798 1.03257 1.19499 0.95269 0.92072 0.93214 1.21024 0.94090 0.97527 1.03412 1.21747 0.94374 0.98139 0.92708 1.20481 0.95354 0.93369 1.02828 1.17634 0.85596 0.85046 0.86709 1.90629 1.68940 1.30896 1.57410 1.41896 1.07427 1.06780 1.61380 1.19885 0.81015 0.94870 1.46567 0.87238 1.25411 1.01463 0.94468 0.96631 1.69583 1.37250 0.97861 1.48130 0.85743 0.81165 0.78120 0.78694 1.20063 1.20670 1.19065 1.21038 0.90993 0.99587 0.88186 1.30086 1.05785 1.18049 1.21383 1.05042 0.75230 0.74319 0.77147 1.30308 1.15106 1.11708 1.23353 1.93589 1.56396 1.56736 1.86557 1.93523 1.64458 1.85896 1.49687 0.90203 0.89674 0.88029 0.85117 0.84723 0.77201 0.91327 0.82742 0.84702 0.85083 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 8.45 36.01 0.30 -1.25 16 2 C 0.00 0.02 5.87 -104.52 -0.61 -0.60 16 3 C -0.14 -1.92 9.68 -39.64 -0.38 -2.30 16 4 C -0.05 -0.83 9.54 -39.17 -0.37 -1.21 16 5 C -0.12 -2.32 5.87 -104.97 -0.62 -2.94 16 6 C 0.46 11.49 7.72 -12.38 -0.10 11.39 16 7 O -0.59 -16.74 15.92 5.28 0.08 -16.65 16 8 N -0.54 -13.74 5.23 -11.87 -0.06 -13.80 16 9 C -0.29 -8.04 9.68 -15.00 -0.15 -8.19 16 10 H 0.11 3.13 7.15 -52.48 -0.38 2.76 16 11 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 12 N -0.89 -23.13 13.05 55.50 0.72 -22.41 16 13 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 C 0.02 0.41 9.05 -39.17 -0.35 0.06 16 18 C -0.67 -9.70 5.57 -39.65 -0.22 -9.92 16 19 S 2.50 29.73 5.20 -107.50 -0.56 29.17 16 20 C -0.66 -4.35 10.59 101.05 1.07 -3.28 16 21 O -0.94 -14.72 16.73 -57.54 -0.96 -15.68 16 22 O -0.94 -12.86 15.34 -57.54 -0.88 -13.75 16 23 H 0.08 0.49 7.09 -51.93 -0.37 0.12 16 24 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.10 0.96 4.87 -51.93 -0.25 0.71 16 26 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.14 2.14 6.41 -52.49 -0.34 1.81 16 28 H 0.39 9.30 5.93 -40.82 -0.24 9.06 16 29 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.16 3.01 6.80 -52.49 -0.36 2.66 16 31 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.13 0.63 5.99 -51.92 -0.31 0.32 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -35.13 294.82 -6.83 -41.96 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.06 Total: 9.17 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.53 Total: -17.71 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.66 Total: -36.21 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.76 Total: -46.08 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 29.73 SS G_CDS: -0.56 Total: 29.17 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.13 -6.83 -41.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195160710.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.216 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds