Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38396 * 119.84736 * 2 1 4 4 C 1.37919 * 120.15306 * 179.97438 * 3 2 1 5 5 C 1.39662 * 119.84327 * 0.02562 * 4 3 2 6 6 C 1.47730 * 120.14864 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99889 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.36868 * 120.00143 * 179.97438 * 8 6 5 10 10 H 1.08005 * 119.99846 * 359.97438 * 9 8 6 11 11 C 1.39051 * 120.00467 * 179.97438 * 9 8 6 12 12 N 1.31362 * 119.99284 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00358 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46821 * 90.00156 * 13 11 9 15 15 H 1.48498 * 109.47417 * 209.99995 * 13 11 9 16 16 H 1.48501 * 109.47254 * 330.00382 * 13 11 9 17 17 C 1.39626 * 119.69966 * 359.73600 * 5 4 3 18 18 C 1.37953 * 119.84444 * 0.51301 * 17 5 4 19 19 S 1.76203 * 119.92232 * 179.75207 * 18 17 5 20 20 C 1.81404 * 104.44838 * 114.72851 * 19 18 17 21 21 O 1.42100 * 104.28012 * 358.65826 * 19 18 17 22 22 O 1.42100 * 104.27885 * 230.79937 * 19 18 17 23 23 H 1.09003 * 109.47202 * 270.02282 * 1 2 3 24 24 H 1.09004 * 109.47117 * 30.02421 * 1 2 3 25 25 H 1.08994 * 109.47331 * 150.01862 * 1 2 3 26 26 H 1.08005 * 119.92404 * 359.97438 * 3 2 1 27 27 H 1.07996 * 120.07483 * 180.02562 * 4 3 2 28 28 H 0.97006 * 119.99700 * 359.97438 * 8 6 5 29 29 H 0.97004 * 119.99554 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.07682 * 180.28806 * 17 5 4 31 31 H 1.09002 * 109.47124 * 299.99881 * 20 19 18 32 32 H 1.09001 * 109.46975 * 180.02562 * 20 19 18 33 33 H 1.09004 * 109.47147 * 59.99966 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2004 0.0000 4 6 3.5750 1.2077 0.0005 5 6 4.2764 0.0001 0.0005 6 6 5.7537 0.0001 0.0005 7 8 6.3617 -1.0530 0.0001 8 7 6.4276 1.1672 0.0011 9 6 7.7963 1.1673 0.0016 10 1 8.3363 0.2319 0.0020 11 6 8.4916 2.3714 0.0016 12 7 7.8347 3.5090 0.0016 13 14 10.3595 2.3714 0.0030 14 1 10.8555 2.3708 -1.3967 15 1 10.8540 3.5842 0.7029 16 1 10.8540 1.1592 0.7039 17 6 3.5751 -1.2073 0.0056 18 6 2.1956 -1.1999 -0.0002 19 16 1.3085 -2.7224 -0.0004 20 6 0.4391 -2.7399 1.5916 21 8 2.3217 -3.7184 -0.0262 22 8 0.3845 -2.5894 -1.0718 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6520 2.1336 -0.0004 27 1 4.1112 2.1452 0.0010 28 1 5.9425 2.0073 0.0011 29 1 8.3197 4.3491 0.0020 30 1 4.1114 -2.1447 0.0103 31 1 1.1655 -2.6924 2.4028 32 1 -0.1421 -3.6580 1.6781 33 1 -0.2283 -1.8801 1.6506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195160710.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -107.046956 kcal Electronic energy + Delta-G solvation = -19742.847529 eV Core-core repulsion = 16473.906435 eV Total energy + Delta-G solvation = -3268.941094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06474 -39.40828 -38.22795 -37.00363 -36.21256 -34.20466 -33.30856 -32.25378 -30.31888 -28.71206 -26.83445 -24.20683 -23.56385 -21.64522 -20.34276 -19.84177 -18.78810 -17.50812 -17.12608 -17.06073 -16.90899 -16.24851 -16.10553 -15.69256 -15.51114 -15.07301 -14.92819 -14.58136 -14.00617 -13.88427 -13.63205 -13.48212 -13.35313 -13.16206 -13.05291 -12.87046 -12.61180 -12.58273 -12.51259 -12.14908 -11.89118 -11.66216 -11.54595 -10.62120 -10.44285 -10.20153 -9.81475 -8.62066 -6.07175 -0.86849 -0.35014 0.00274 1.35513 1.38792 1.52094 1.81405 1.89182 2.22513 2.56961 2.87727 3.01709 3.19503 3.27017 3.67647 3.75436 4.01205 4.09245 4.12916 4.16722 4.36496 4.49755 4.64989 4.76612 4.79873 4.96049 5.02493 5.22645 5.28427 5.28604 5.30351 5.75487 5.87385 6.42348 6.95326 7.33746 7.91081 8.55118 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.004117 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.576572 B = 6799.028090 C = 7406.407828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.023 3.977 3 C -0.135 4.135 4 C -0.050 4.050 5 C -0.154 4.154 6 C 0.458 3.542 7 O -0.639 6.639 8 N -0.548 5.548 9 C -0.341 4.341 10 H 0.082 0.918 11 C -0.006 4.006 12 N -0.907 5.907 13 Si 1.000 3.000 14 H -0.268 1.268 15 H -0.264 1.264 16 H -0.272 1.272 17 C 0.003 3.997 18 C -0.671 4.671 19 S 2.499 3.501 20 C -0.620 4.620 21 O -0.987 6.987 22 O -0.960 6.960 23 H 0.125 0.875 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.176 0.824 27 H 0.136 0.864 28 H 0.399 0.601 29 H 0.285 0.715 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.165 0.835 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.474 -2.443 4.927 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.153 4.153 4 C -0.069 4.069 5 C -0.158 4.158 6 C 0.248 3.752 7 O -0.529 6.529 8 N -0.182 5.182 9 C -0.470 4.470 10 H 0.100 0.900 11 C -0.207 4.207 12 N -0.546 5.546 13 Si 0.822 3.178 14 H -0.194 1.194 15 H -0.188 1.188 16 H -0.197 1.197 17 C -0.017 4.017 18 C -0.755 4.755 19 S 2.682 3.318 20 C -0.775 4.775 21 O -0.985 6.985 22 O -0.957 6.957 23 H 0.143 0.857 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.193 0.807 27 H 0.154 0.846 28 H 0.235 0.765 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.183 0.817 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.944 -3.467 4.233 20.681 hybrid contribution 1.586 1.109 0.251 1.952 sum -18.357 -2.359 4.484 19.044 Atomic orbital electron populations 1.21898 0.87108 1.07916 1.06408 1.20171 0.97895 0.90859 0.88930 1.21518 0.92542 0.99790 1.01465 1.21829 0.96073 0.96596 0.92452 1.20142 0.92418 0.95733 1.07537 1.18488 0.87902 0.84121 0.84686 1.90564 1.70822 1.32489 1.59054 1.41847 1.07010 1.07162 1.62197 1.19805 0.82169 0.94686 1.50370 0.89973 1.26186 1.05692 0.93599 0.95256 1.69624 1.38838 0.98249 1.47934 0.84830 0.75675 0.78317 0.78936 1.19365 1.18782 1.19680 1.20877 0.92985 0.97896 0.89978 1.30536 1.04130 1.20777 1.20088 1.05180 0.74558 0.72517 0.79526 1.30075 1.15050 1.15111 1.17228 1.93533 1.58872 1.57775 1.88288 1.93495 1.63796 1.85505 1.52873 0.85695 0.87478 0.88122 0.80657 0.84610 0.76486 0.90562 0.85590 0.83206 0.81745 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.45 71.24 0.60 -1.53 16 2 C 0.02 0.51 5.87 -19.80 -0.12 0.39 16 3 C -0.14 -3.20 9.68 22.23 0.22 -2.98 16 4 C -0.05 -1.66 9.54 22.54 0.22 -1.45 16 5 C -0.15 -6.54 5.87 -20.09 -0.12 -6.66 16 6 C 0.46 24.66 7.72 86.75 0.67 25.33 16 7 O -0.64 -39.54 15.92 -4.03 -0.06 -39.61 16 8 N -0.55 -29.72 5.23 -309.72 -1.62 -31.34 16 9 C -0.34 -19.87 9.68 84.10 0.81 -19.05 16 10 H 0.08 5.11 7.15 -2.91 -0.02 5.09 16 11 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 12 N -0.91 -47.90 13.05 21.68 0.28 -47.62 16 13 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 C 0.00 0.12 9.05 22.54 0.20 0.32 16 18 C -0.67 -18.88 5.57 22.23 0.12 -18.75 16 19 S 2.50 55.33 5.20 -56.49 -0.29 55.04 16 20 C -0.62 -4.86 10.59 113.37 1.20 -3.65 16 21 O -0.99 -32.09 16.73 -127.65 -2.14 -34.23 16 22 O -0.96 -24.34 15.34 -127.65 -1.96 -26.30 16 23 H 0.13 0.51 7.09 -2.39 -0.02 0.49 16 24 H 0.11 0.95 8.08 -2.39 -0.02 0.93 16 25 H 0.10 1.37 4.87 -2.39 -0.01 1.36 16 26 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.14 4.37 6.41 -2.91 -0.02 4.35 16 28 H 0.40 19.97 5.93 -92.70 -0.55 19.42 16 29 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.13 5.50 6.80 -2.91 -0.02 5.48 16 31 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.16 0.44 8.14 -2.39 -0.02 0.43 16 33 H 0.17 0.31 5.99 -2.39 -0.01 0.30 16 Total: -1.00 -85.12 294.82 1.13 -83.99 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.62 Total: 23.48 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.28 Total: -27.85 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.34 Total: -78.96 kcal Atomic # 8 Polarization: -95.98 SS G_CDS: -4.16 Total: -100.14 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 55.33 SS G_CDS: -0.29 Total: 55.04 kcal Total: -85.12 1.13 -83.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195160710.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.058 kcal (2) G-P(sol) polarization free energy of solvation -85.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds