Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47057 * 274.98591 * 3 2 1 5 5 H 1.48500 * 109.46825 * 34.98018 * 3 2 1 6 6 H 1.48498 * 109.47300 * 154.98185 * 3 2 1 7 7 C 1.40056 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99766 * 186.15290 * 7 2 1 9 9 C 1.46368 * 120.00216 * 6.15208 * 7 2 1 10 10 O 1.21695 * 119.99967 * 353.94065 * 9 7 2 11 11 N 1.34778 * 120.00065 * 173.93930 * 9 7 2 12 12 C 1.46501 * 119.99895 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47049 * 180.02562 * 12 11 9 14 14 S 1.81402 * 109.47372 * 180.02562 * 13 12 11 15 15 O 1.42099 * 110.54361 * 68.37316 * 14 13 12 16 16 O 1.42102 * 110.54300 * 291.62614 * 14 13 12 17 17 C 1.76195 * 104.45264 * 180.02562 * 14 13 12 18 18 C 1.38230 * 120.00323 * 90.00062 * 17 14 13 19 19 C 1.38234 * 120.00327 * 180.02562 * 18 17 14 20 20 C 1.38233 * 119.99730 * 359.94733 * 19 18 17 21 21 C 1.38241 * 120.00292 * 0.28236 * 20 19 18 22 22 C 1.38233 * 119.99742 * 269.97736 * 17 14 13 23 23 H 0.96996 * 120.00193 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99771 * 359.97438 * 11 9 7 25 25 H 1.08995 * 109.47211 * 60.00060 * 12 11 9 26 26 H 1.09001 * 109.47226 * 299.99967 * 12 11 9 27 27 H 1.08999 * 109.47612 * 59.99894 * 13 12 11 28 28 H 1.09001 * 109.47019 * 300.00019 * 13 12 11 29 29 H 1.08003 * 119.99739 * 359.97438 * 18 17 14 30 30 H 1.07999 * 120.00160 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.00043 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.99829 * 179.71917 * 21 20 19 33 33 H 1.07999 * 120.00102 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0645 -2.4828 -0.1368 11 7 1.9611 -3.6343 -0.2571 12 6 1.2349 -4.8995 -0.3919 13 6 2.2349 -6.0511 -0.5128 14 16 1.3357 -7.6177 -0.6805 15 8 0.6645 -7.6759 -1.9316 16 8 0.6608 -7.9372 0.5285 17 6 2.5996 -8.8387 -0.8076 18 6 3.0932 -9.4439 0.3330 19 6 4.0852 -10.4015 0.2333 20 6 4.5828 -10.7546 -1.0070 21 6 4.0925 -10.1460 -2.1474 22 6 3.0973 -9.1918 -2.0479 23 1 -0.4850 0.8400 -0.0004 24 1 2.9311 -3.6296 -0.2559 25 1 0.6092 -4.8661 -1.2838 26 1 0.6079 -5.0540 0.4862 27 1 2.8603 -6.0845 0.3793 28 1 2.8622 -5.8969 -1.3907 29 1 2.7044 -9.1680 1.3021 30 1 4.4711 -10.8740 1.1245 31 1 5.3575 -11.5031 -1.0850 32 1 4.4846 -10.4187 -3.1160 33 1 2.7117 -8.7190 -2.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274209051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -82.621565 kcal Electronic energy + Delta-G solvation = -19112.107620 eV Core-core repulsion = 15844.225691 eV Total energy + Delta-G solvation = -3267.881930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38867 -37.47167 -37.11038 -35.94202 -34.18859 -32.43987 -31.63606 -31.34844 -30.08675 -26.32784 -23.76898 -23.05450 -22.72500 -19.89977 -19.14657 -18.07924 -17.39916 -16.42065 -16.21756 -15.93565 -15.27337 -15.20332 -14.86884 -14.48094 -14.43674 -13.94144 -13.85011 -13.31259 -12.56876 -12.53965 -12.48146 -12.06786 -12.00505 -11.86235 -11.58020 -11.31395 -11.29437 -11.01788 -10.90045 -10.70752 -10.47257 -10.24954 -9.70720 -9.37778 -8.89059 -7.69359 -7.66583 -6.24070 -4.69251 -0.05419 0.54257 0.96000 2.82487 3.11971 3.15791 3.19080 3.22600 3.80337 4.04686 4.08065 4.46852 4.53148 4.55075 4.62837 4.65390 4.81090 4.90296 4.98244 5.17126 5.34026 5.47472 5.58633 5.68243 5.77505 5.88013 6.00252 6.14618 6.14789 6.48984 7.39497 7.81259 7.94536 8.25812 8.97548 9.42537 10.53434 10.71212 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.003344 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.140099 B = 8372.086911 C = 8719.555774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.577 6.577 11 N -0.761 5.761 12 C 0.142 3.858 13 C -0.614 4.614 14 S 2.502 3.498 15 O -0.933 6.933 16 O -0.933 6.933 17 C -0.657 4.657 18 C -0.024 4.024 19 C -0.142 4.142 20 C -0.069 4.069 21 C -0.142 4.142 22 C -0.024 4.024 23 H 0.270 0.730 24 H 0.384 0.616 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.847 -18.940 -2.005 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.356 3.644 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.015 3.985 13 C -0.744 4.744 14 S 2.681 3.319 15 O -0.930 6.930 16 O -0.930 6.930 17 C -0.744 4.744 18 C -0.043 4.043 19 C -0.161 4.161 20 C -0.087 4.087 21 C -0.161 4.161 22 C -0.043 4.043 23 H 0.080 0.920 24 H 0.216 0.784 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.870 -19.011 -2.018 21.515 hybrid contribution 1.999 0.639 -0.032 2.099 sum 11.869 -18.371 -2.050 21.968 Atomic orbital electron populations 1.70020 1.07113 1.27457 1.34786 1.25727 0.94639 1.00387 0.92605 0.86317 0.80151 0.81327 0.78697 1.19771 1.20406 1.18896 1.20850 0.94128 0.89334 1.53897 0.91241 1.18318 0.87250 0.82252 0.76559 1.90621 1.14028 1.86180 1.55156 1.46132 1.08632 1.04772 1.82335 1.20543 0.92315 0.83358 1.02283 1.30563 1.13666 1.17848 1.12292 1.05360 0.75306 0.76346 0.74895 1.93574 1.70220 1.86125 1.43118 1.93574 1.70083 1.82613 1.46777 1.30745 1.22578 1.21315 0.99716 1.21043 0.92704 0.92969 0.97562 1.21326 0.97903 0.98726 0.98152 1.21507 0.97428 0.97046 0.92756 1.21329 0.97892 0.97757 0.99130 1.21044 0.92680 0.94463 0.96102 0.91960 0.78429 0.91559 0.91574 0.84330 0.84331 0.83904 0.84996 0.85299 0.84996 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.85 55.55 0.66 -22.23 16 2 C 0.09 2.40 5.49 -17.36 -0.10 2.30 16 3 Si 0.91 19.88 29.56 -169.99 -5.03 14.85 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -15.21 9.53 -35.63 -0.34 -15.55 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.64 7.74 -12.99 -0.10 15.54 16 10 O -0.58 -18.78 15.05 5.19 0.08 -18.70 16 11 N -0.76 -16.58 5.55 -61.72 -0.34 -16.92 16 12 C 0.14 2.65 5.68 -4.04 -0.02 2.62 16 13 C -0.61 -7.51 6.09 37.16 0.23 -7.29 16 14 S 2.50 32.51 5.16 -107.50 -0.55 31.96 16 15 O -0.93 -14.76 17.13 -57.54 -0.99 -15.74 16 16 O -0.93 -14.75 17.12 -57.54 -0.99 -15.73 16 17 C -0.66 -7.12 5.66 -39.59 -0.22 -7.35 16 18 C -0.02 -0.23 9.47 -39.59 -0.37 -0.61 16 19 C -0.14 -1.14 10.05 -39.58 -0.40 -1.53 16 20 C -0.07 -0.50 10.05 -39.58 -0.40 -0.90 16 21 C -0.14 -1.14 10.05 -39.58 -0.40 -1.53 16 22 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 23 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 24 H 0.38 7.01 8.45 -40.82 -0.35 6.66 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.14 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.14 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.14 1.24 7.57 -52.48 -0.40 0.85 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.24 7.57 -52.49 -0.40 0.85 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -39.27 308.51 -8.65 -47.93 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.65 Total: 4.84 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.50 Total: -14.90 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.32 Total: -39.15 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.89 Total: -50.18 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 32.51 SS G_CDS: -0.55 Total: 31.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -39.27 -8.65 -47.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274209051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.696 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds