Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47057 * 274.98591 * 3 2 1 5 5 H 1.48500 * 109.46825 * 34.98018 * 3 2 1 6 6 H 1.48498 * 109.47300 * 154.98185 * 3 2 1 7 7 C 1.40056 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99766 * 186.15290 * 7 2 1 9 9 C 1.46368 * 120.00216 * 6.15208 * 7 2 1 10 10 O 1.21695 * 119.99967 * 353.94065 * 9 7 2 11 11 N 1.34778 * 120.00065 * 173.93930 * 9 7 2 12 12 C 1.46501 * 119.99895 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47049 * 180.02562 * 12 11 9 14 14 S 1.81402 * 109.47372 * 180.02562 * 13 12 11 15 15 O 1.42099 * 110.54361 * 68.37316 * 14 13 12 16 16 O 1.42102 * 110.54300 * 291.62614 * 14 13 12 17 17 C 1.76195 * 104.45264 * 180.02562 * 14 13 12 18 18 C 1.38230 * 120.00323 * 90.00062 * 17 14 13 19 19 C 1.38234 * 120.00327 * 180.02562 * 18 17 14 20 20 C 1.38233 * 119.99730 * 359.94733 * 19 18 17 21 21 C 1.38241 * 120.00292 * 0.28236 * 20 19 18 22 22 C 1.38233 * 119.99742 * 269.97736 * 17 14 13 23 23 H 0.96996 * 120.00193 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99771 * 359.97438 * 11 9 7 25 25 H 1.08995 * 109.47211 * 60.00060 * 12 11 9 26 26 H 1.09001 * 109.47226 * 299.99967 * 12 11 9 27 27 H 1.08999 * 109.47612 * 59.99894 * 13 12 11 28 28 H 1.09001 * 109.47019 * 300.00019 * 13 12 11 29 29 H 1.08003 * 119.99739 * 359.97438 * 18 17 14 30 30 H 1.07999 * 120.00160 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.00043 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.99829 * 179.71917 * 21 20 19 33 33 H 1.07999 * 120.00102 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0645 -2.4828 -0.1368 11 7 1.9611 -3.6343 -0.2571 12 6 1.2349 -4.8995 -0.3919 13 6 2.2349 -6.0511 -0.5128 14 16 1.3357 -7.6177 -0.6805 15 8 0.6645 -7.6759 -1.9316 16 8 0.6608 -7.9372 0.5285 17 6 2.5996 -8.8387 -0.8076 18 6 3.0932 -9.4439 0.3330 19 6 4.0852 -10.4015 0.2333 20 6 4.5828 -10.7546 -1.0070 21 6 4.0925 -10.1460 -2.1474 22 6 3.0973 -9.1918 -2.0479 23 1 -0.4850 0.8400 -0.0004 24 1 2.9311 -3.6296 -0.2559 25 1 0.6092 -4.8661 -1.2838 26 1 0.6079 -5.0540 0.4862 27 1 2.8603 -6.0845 0.3793 28 1 2.8622 -5.8969 -1.3907 29 1 2.7044 -9.1680 1.3021 30 1 4.4711 -10.8740 1.1245 31 1 5.3575 -11.5031 -1.0850 32 1 4.4846 -10.4187 -3.1160 33 1 2.7117 -8.7190 -2.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274209051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -114.208303 kcal Electronic energy + Delta-G solvation = -19113.477324 eV Core-core repulsion = 15844.225691 eV Total energy + Delta-G solvation = -3269.251633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.03223 -39.50791 -38.26515 -37.10120 -35.98645 -34.56983 -32.31920 -31.98111 -31.72927 -28.35520 -24.88772 -23.86698 -23.69183 -21.88113 -20.15449 -19.31744 -18.98426 -17.66117 -17.27557 -17.20418 -16.80098 -16.22769 -16.22228 -15.82089 -15.60538 -15.46834 -14.46750 -14.44957 -14.33484 -14.00810 -13.34232 -13.26456 -13.21229 -13.16537 -13.13029 -12.92583 -12.63963 -12.60842 -12.19286 -12.12772 -11.99166 -11.59481 -10.94496 -10.38678 -10.02205 -9.92350 -9.62388 -8.31995 -6.88088 -1.08517 -0.17206 0.32292 1.41751 1.42876 1.59419 1.85484 2.24299 2.43059 2.44361 2.80168 3.07192 3.17752 3.42005 3.54254 3.74538 3.91349 3.98490 4.13530 4.28987 4.41693 4.43969 4.60230 4.71818 4.73692 4.98945 5.11551 5.29526 5.31580 5.40479 5.83086 5.88778 6.09088 6.22979 6.84611 7.48929 8.43725 8.64236 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.003344 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.140099 B = 8372.086911 C = 8719.555774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.532 3.468 10 O -0.633 6.633 11 N -0.746 5.746 12 C 0.131 3.869 13 C -0.598 4.598 14 S 2.511 3.489 15 O -0.970 6.970 16 O -0.970 6.970 17 C -0.660 4.660 18 C -0.043 4.043 19 C -0.144 4.144 20 C -0.063 4.063 21 C -0.144 4.144 22 C -0.043 4.043 23 H 0.276 0.724 24 H 0.404 0.596 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.171 0.829 28 H 0.170 0.830 29 H 0.146 0.854 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.642 -19.725 -2.172 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.607 4.607 8 H 0.112 0.888 9 C 0.337 3.663 10 O -0.521 6.521 11 N -0.403 5.403 12 C 0.005 3.995 13 C -0.728 4.728 14 S 2.695 3.305 15 O -0.967 6.967 16 O -0.967 6.967 17 C -0.750 4.750 18 C -0.062 4.062 19 C -0.162 4.162 20 C -0.081 4.081 21 C -0.162 4.162 22 C -0.062 4.062 23 H 0.085 0.915 24 H 0.239 0.761 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.188 0.812 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.684 -19.820 -2.185 24.184 hybrid contribution 0.894 0.712 0.013 1.143 sum 14.578 -19.108 -2.172 24.132 Atomic orbital electron populations 1.70197 1.09722 1.29143 1.36086 1.27065 0.95535 1.05230 0.91153 0.84929 0.78916 0.74784 0.79155 1.18794 1.19930 1.16810 1.21435 0.95461 0.89832 1.54004 0.88761 1.18773 0.86881 0.84347 0.76332 1.90574 1.16392 1.87471 1.57629 1.45702 1.09574 1.04431 1.80633 1.20599 0.93778 0.84272 1.00835 1.30430 1.12483 1.14367 1.15478 1.04612 0.75727 0.76734 0.73380 1.93522 1.72113 1.86797 1.44286 1.93522 1.71979 1.83303 1.47909 1.30141 1.22618 1.21306 1.00957 1.21269 0.93623 0.93917 0.97344 1.21701 0.96926 0.97838 0.99770 1.21979 0.97333 0.96785 0.92014 1.21704 0.96916 0.96744 1.00869 1.21270 0.93603 0.95569 0.95730 0.91456 0.76124 0.93287 0.93253 0.81151 0.81170 0.83620 0.82348 0.81881 0.82348 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.62 11.85 21.84 0.26 -50.36 16 2 C 0.03 1.41 5.49 85.31 0.47 1.88 16 3 Si 1.00 40.34 29.56 68.60 2.03 42.37 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 7 C -0.57 -31.93 9.53 24.83 0.24 -31.70 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 9 C 0.53 30.99 7.74 86.36 0.67 31.66 16 10 O -0.63 -43.25 15.05 -4.33 -0.07 -43.32 16 11 N -0.75 -32.74 5.55 -467.41 -2.59 -35.34 16 12 C 0.13 5.06 5.68 86.38 0.49 5.55 16 13 C -0.60 -14.14 6.09 71.98 0.44 -13.70 16 14 S 2.51 66.60 5.16 -56.49 -0.29 66.31 16 15 O -0.97 -31.94 17.13 -127.65 -2.19 -34.13 16 16 O -0.97 -31.91 17.12 -127.65 -2.19 -34.09 16 17 C -0.66 -13.63 5.66 22.27 0.13 -13.50 16 18 C -0.04 -0.76 9.47 22.27 0.21 -0.55 16 19 C -0.14 -1.83 10.05 22.27 0.22 -1.60 16 20 C -0.06 -0.67 10.05 22.27 0.22 -0.44 16 21 C -0.14 -1.83 10.05 22.27 0.22 -1.60 16 22 C -0.04 -0.77 9.47 22.27 0.21 -0.55 16 23 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 24 H 0.40 14.22 8.45 -92.71 -0.78 13.44 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.17 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.17 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.15 2.41 7.57 -2.91 -0.02 2.39 16 30 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 31 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.15 2.41 7.57 -2.91 -0.02 2.39 16 Total: -1.00 -89.67 308.51 -1.16 -90.83 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.35 Total: 22.30 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.52 Total: -24.58 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.34 Total: -85.70 kcal Atomic # 8 Polarization: -107.10 SS G_CDS: -4.44 Total: -111.54 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 66.60 SS G_CDS: -0.29 Total: 66.31 kcal Total: -89.67 -1.16 -90.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274209051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.375 kcal (2) G-P(sol) polarization free energy of solvation -89.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds