Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37962 * 120.07241 * 2 1 4 4 C 1.38350 * 120.15064 * 180.25372 * 3 2 1 5 5 C 1.38404 * 120.30352 * 359.49019 * 4 3 2 6 6 S 1.76202 * 119.92615 * 180.27394 * 5 4 3 7 7 C 1.81406 * 104.44643 * 89.99728 * 6 5 4 8 8 O 1.42091 * 104.27981 * 206.07016 * 6 5 4 9 9 O 1.42101 * 104.27611 * 333.93269 * 6 5 4 10 10 C 1.37918 * 120.15075 * 0.25528 * 5 4 3 11 11 C 1.39618 * 120.07862 * 179.74362 * 2 1 3 12 12 C 1.47727 * 120.15208 * 359.97438 * 11 2 1 13 13 O 1.21584 * 120.00238 * 353.76927 * 12 11 2 14 14 N 1.34779 * 119.99891 * 173.77102 * 12 11 2 15 15 C 1.36871 * 119.99805 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.39046 * 119.99985 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99324 * 19 17 15 21 21 H 1.48503 * 109.47063 * 209.99873 * 19 17 15 22 22 H 1.48506 * 109.46494 * 329.99133 * 19 17 15 23 23 H 1.08999 * 109.46773 * 263.66284 * 1 2 3 24 24 H 1.08997 * 109.47762 * 23.66839 * 1 2 3 25 25 H 1.09006 * 109.46952 * 143.67194 * 1 2 3 26 26 H 1.07999 * 119.92711 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.85205 * 179.76160 * 4 3 2 28 28 H 1.08997 * 109.46682 * 60.00552 * 7 6 5 29 29 H 1.08997 * 109.46651 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47253 * 299.99863 * 7 6 5 31 31 H 1.07998 * 120.07394 * 179.97438 * 10 5 4 32 32 H 0.97004 * 120.00148 * 359.97438 * 14 12 11 33 33 H 0.97006 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2819 0.0019 0.0000 6 16 6.0438 0.0159 0.0005 7 6 6.4958 0.0271 1.7573 8 8 6.4044 -1.2207 -0.5993 9 8 6.3845 1.2531 -0.6098 10 6 3.6034 -1.1989 0.0053 11 6 2.2068 -1.2082 0.0054 12 6 1.4733 -2.4905 0.0117 13 8 0.2629 -2.4980 0.1265 14 7 2.1459 -3.6521 -0.1097 15 6 1.4663 -4.8401 -0.1044 16 1 0.3911 -4.8468 -0.0025 17 6 2.1601 -6.0386 -0.2292 18 7 3.4679 -6.0306 -0.3526 19 14 1.2327 -7.6601 -0.2212 20 1 0.8549 -8.0212 -1.6112 21 1 2.0992 -8.7232 0.3484 22 1 0.0067 -7.5249 0.6058 23 1 -0.3633 -0.1134 1.0214 24 1 -0.3634 0.9412 -0.4125 25 1 -0.3633 -0.8280 -0.6088 26 1 1.6584 2.1292 -0.0004 27 1 4.1181 2.1332 -0.0092 28 1 6.0959 -0.8641 2.2409 29 1 7.5816 0.0357 1.8530 30 1 6.0817 0.9158 2.2334 31 1 4.1509 -2.1298 0.0090 32 1 3.1116 -3.6462 -0.2017 33 1 3.9520 -6.8667 -0.4401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339924970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -79.396525 kcal Electronic energy + Delta-G solvation = -19919.788818 eV Core-core repulsion = 16652.046737 eV Total energy + Delta-G solvation = -3267.742081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.65526 -37.49148 -37.02428 -35.87368 -34.35464 -32.57332 -31.67237 -30.58909 -29.59851 -27.15281 -25.19442 -23.23796 -21.67608 -20.13178 -18.76782 -18.18468 -17.33017 -16.23264 -16.15971 -15.56799 -15.20039 -14.81779 -14.70386 -14.14626 -13.91203 -13.76529 -13.36829 -13.27184 -12.83963 -12.75087 -12.03681 -11.99503 -11.94473 -11.84155 -11.81391 -11.53813 -11.39390 -11.18411 -11.05858 -10.54191 -10.46078 -10.33180 -9.68750 -8.89463 -8.72673 -8.36958 -8.13552 -6.61065 -3.94924 0.09284 0.97454 1.29750 2.90319 3.08148 3.18595 3.23733 3.34750 3.92631 4.02973 4.14330 4.30367 4.67882 4.69931 4.83604 4.98162 5.05647 5.20679 5.23657 5.50074 5.53698 5.80024 5.82893 5.88670 6.14606 6.17565 6.27126 6.33387 6.56610 6.88436 7.07116 7.37460 7.88335 8.42231 8.98634 9.33240 9.87639 10.54920 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.005665 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.692184 B = 4941.518232 C = 6313.740602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.025 4.025 5 C -0.671 4.671 6 S 2.501 3.499 7 C -0.652 4.652 8 O -0.932 6.932 9 O -0.945 6.945 10 C -0.008 4.008 11 C -0.117 4.117 12 C 0.460 3.540 13 O -0.590 6.590 14 N -0.539 5.539 15 C -0.297 4.297 16 H 0.110 0.890 17 C 0.025 3.975 18 N -0.882 5.882 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.267 1.267 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.395 0.605 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 12.439 4.251 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.170 4.170 4 C -0.045 4.045 5 C -0.758 4.758 6 S 2.681 3.319 7 C -0.801 4.801 8 O -0.929 6.929 9 O -0.942 6.942 10 C -0.028 4.028 11 C -0.121 4.121 12 C 0.249 3.751 13 O -0.478 6.478 14 N -0.173 5.173 15 C -0.427 4.427 16 H 0.127 0.873 17 C -0.180 4.180 18 N -0.521 5.521 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.192 1.192 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.230 0.770 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.730 12.201 3.595 13.571 hybrid contribution -0.299 -0.808 0.606 1.053 sum 4.431 11.393 4.201 12.926 Atomic orbital electron populations 1.21158 0.89789 1.02891 1.04031 1.20356 0.97235 0.91558 0.89828 1.21085 0.94016 0.97667 1.04246 1.20871 0.94609 0.96190 0.92808 1.30254 1.25252 0.99284 1.20999 1.05077 0.74574 0.74653 0.77617 1.30236 1.12050 1.12201 1.25640 1.93626 1.81962 1.44143 1.73169 1.93555 1.82697 1.44825 1.73124 1.21175 0.94134 0.96781 0.90731 1.20348 0.93068 0.95184 1.03546 1.17561 0.87485 0.83016 0.87038 1.90536 1.13304 1.86344 1.57653 1.41959 1.10068 1.04964 1.60261 1.19842 0.94255 0.82087 1.46503 0.87254 1.25441 0.95713 1.00258 0.96572 1.69603 1.06465 1.29269 1.46762 0.85759 0.79128 0.80072 0.78802 1.20081 1.20654 1.19158 0.90496 0.93054 0.87504 0.85151 0.84474 0.84731 0.85250 0.85157 0.83847 0.77041 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 8.73 36.01 0.31 -1.69 16 2 C 0.01 0.20 5.92 -104.21 -0.62 -0.41 16 3 C -0.15 -2.10 9.66 -39.64 -0.38 -2.48 16 4 C -0.03 -0.33 9.47 -39.48 -0.37 -0.71 16 5 C -0.67 -9.76 5.65 -39.64 -0.22 -9.98 16 6 S 2.50 30.82 5.80 -107.50 -0.62 30.20 16 7 C -0.65 -5.05 10.80 101.05 1.09 -3.96 16 8 O -0.93 -15.33 17.12 -57.54 -0.98 -16.32 16 9 O -0.94 -13.48 17.12 -57.54 -0.98 -14.46 16 10 C -0.01 -0.14 8.95 -39.17 -0.35 -0.49 16 11 C -0.12 -2.31 5.87 -104.97 -0.62 -2.93 16 12 C 0.46 11.05 7.65 -12.38 -0.09 10.95 16 13 O -0.59 -15.33 12.92 5.29 0.07 -15.26 16 14 N -0.54 -13.69 5.23 -11.87 -0.06 -13.75 16 15 C -0.30 -8.06 9.68 -15.00 -0.15 -8.20 16 16 H 0.11 3.05 7.15 -52.48 -0.38 2.68 16 17 C 0.02 0.64 5.50 -17.45 -0.10 0.54 16 18 N -0.88 -23.41 13.05 55.50 0.72 -22.68 16 19 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 25 H 0.11 2.07 5.86 -51.93 -0.30 1.77 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.14 1.42 7.56 -52.49 -0.40 1.03 16 28 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 2.55 5.96 -52.49 -0.31 2.24 16 32 H 0.39 9.66 5.97 -40.82 -0.24 9.42 16 33 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -34.15 299.44 -7.17 -41.31 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -3.30 Total: 10.59 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.49 Total: -19.35 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.66 Total: -36.43 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.90 Total: -46.04 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 30.82 SS G_CDS: -0.62 Total: 30.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.15 -7.17 -41.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339924970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.084 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds