Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37962 * 120.07241 * 2 1 4 4 C 1.38350 * 120.15064 * 180.25372 * 3 2 1 5 5 C 1.38404 * 120.30352 * 359.49019 * 4 3 2 6 6 S 1.76202 * 119.92615 * 180.27394 * 5 4 3 7 7 C 1.81406 * 104.44643 * 89.99728 * 6 5 4 8 8 O 1.42091 * 104.27981 * 206.07016 * 6 5 4 9 9 O 1.42101 * 104.27611 * 333.93269 * 6 5 4 10 10 C 1.37918 * 120.15075 * 0.25528 * 5 4 3 11 11 C 1.39618 * 120.07862 * 179.74362 * 2 1 3 12 12 C 1.47727 * 120.15208 * 359.97438 * 11 2 1 13 13 O 1.21584 * 120.00238 * 353.76927 * 12 11 2 14 14 N 1.34779 * 119.99891 * 173.77102 * 12 11 2 15 15 C 1.36871 * 119.99805 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.39046 * 119.99985 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99324 * 19 17 15 21 21 H 1.48503 * 109.47063 * 209.99873 * 19 17 15 22 22 H 1.48506 * 109.46494 * 329.99133 * 19 17 15 23 23 H 1.08999 * 109.46773 * 263.66284 * 1 2 3 24 24 H 1.08997 * 109.47762 * 23.66839 * 1 2 3 25 25 H 1.09006 * 109.46952 * 143.67194 * 1 2 3 26 26 H 1.07999 * 119.92711 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.85205 * 179.76160 * 4 3 2 28 28 H 1.08997 * 109.46682 * 60.00552 * 7 6 5 29 29 H 1.08997 * 109.46651 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47253 * 299.99863 * 7 6 5 31 31 H 1.07998 * 120.07394 * 179.97438 * 10 5 4 32 32 H 0.97004 * 120.00148 * 359.97438 * 14 12 11 33 33 H 0.97006 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1958 -0.0053 5 6 4.2819 0.0019 0.0000 6 16 6.0438 0.0159 0.0005 7 6 6.4958 0.0271 1.7573 8 8 6.4044 -1.2207 -0.5993 9 8 6.3845 1.2531 -0.6098 10 6 3.6034 -1.1989 0.0053 11 6 2.2068 -1.2082 0.0054 12 6 1.4733 -2.4905 0.0117 13 8 0.2629 -2.4980 0.1265 14 7 2.1459 -3.6521 -0.1097 15 6 1.4663 -4.8401 -0.1044 16 1 0.3911 -4.8468 -0.0025 17 6 2.1601 -6.0386 -0.2292 18 7 3.4679 -6.0306 -0.3526 19 14 1.2327 -7.6601 -0.2212 20 1 0.8549 -8.0212 -1.6112 21 1 2.0992 -8.7232 0.3484 22 1 0.0067 -7.5249 0.6058 23 1 -0.3633 -0.1134 1.0214 24 1 -0.3634 0.9412 -0.4125 25 1 -0.3633 -0.8280 -0.6088 26 1 1.6584 2.1292 -0.0004 27 1 4.1181 2.1332 -0.0092 28 1 6.0959 -0.8641 2.2409 29 1 7.5816 0.0357 1.8530 30 1 6.0817 0.9158 2.2334 31 1 4.1509 -2.1298 0.0090 32 1 3.1116 -3.6462 -0.2017 33 1 3.9520 -6.8667 -0.4401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339924970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = -105.721045 kcal Electronic energy + Delta-G solvation = -19920.930335 eV Core-core repulsion = 16652.046737 eV Total energy + Delta-G solvation = -3268.883598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16873 -39.14842 -38.11796 -36.96582 -36.25692 -34.01779 -33.40021 -32.06893 -30.28660 -28.48579 -27.03918 -24.68918 -22.95963 -21.67856 -20.37083 -19.60272 -18.77908 -17.64206 -17.13988 -16.87837 -16.57286 -16.44458 -16.12239 -15.83848 -15.51908 -15.07667 -14.47834 -14.31852 -13.99169 -13.91939 -13.62139 -13.23536 -13.15068 -13.08059 -13.05845 -13.02355 -12.91203 -12.72594 -12.42921 -12.12274 -12.02343 -11.61209 -11.59505 -10.26498 -10.21365 -10.07448 -10.01195 -8.56513 -6.02957 -0.84205 -0.28487 -0.01521 1.37793 1.39817 1.53754 1.85606 1.95952 2.24251 2.57763 3.00370 3.03560 3.21960 3.24965 3.71859 3.84302 3.91465 4.12204 4.13804 4.33784 4.43008 4.54473 4.67025 4.83031 4.84468 4.96635 4.98467 5.06569 5.26604 5.31995 5.55580 5.78867 5.93076 6.46134 6.99497 7.39206 7.94388 8.60549 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.005665 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.692184 B = 4941.518232 C = 6313.740602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.001 3.999 3 C -0.139 4.139 4 C -0.009 4.009 5 C -0.672 4.672 6 S 2.507 3.493 7 C -0.624 4.624 8 O -0.984 6.984 9 O -0.963 6.963 10 C -0.016 4.016 11 C -0.154 4.154 12 C 0.462 3.538 13 O -0.616 6.616 14 N -0.557 5.557 15 C -0.337 4.337 16 H 0.089 0.911 17 C -0.012 4.012 18 N -0.912 5.912 19 Si 1.002 2.998 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.268 1.268 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.175 0.825 27 H 0.179 0.821 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.395 0.605 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 15.184 5.422 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.001 4.001 3 C -0.157 4.157 4 C -0.028 4.028 5 C -0.757 4.757 6 S 2.690 3.310 7 C -0.778 4.778 8 O -0.981 6.981 9 O -0.961 6.961 10 C -0.036 4.036 11 C -0.158 4.158 12 C 0.252 3.748 13 O -0.505 6.505 14 N -0.192 5.192 15 C -0.466 4.466 16 H 0.107 0.893 17 C -0.213 4.213 18 N -0.551 5.551 19 Si 0.824 3.176 20 H -0.195 1.195 21 H -0.192 1.192 22 H -0.192 1.192 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.193 0.807 27 H 0.197 0.803 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.182 0.818 31 H 0.147 0.853 32 H 0.230 0.770 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.781 14.968 4.719 16.725 hybrid contribution -0.557 -1.358 0.307 1.499 sum 5.224 13.610 5.026 15.420 Atomic orbital electron populations 1.21059 0.89618 1.03418 1.03324 1.20599 0.97650 0.91829 0.90018 1.21536 0.94440 0.97807 1.01946 1.21481 0.94694 0.97121 0.89473 1.30645 1.26866 0.98531 1.19648 1.04896 0.73068 0.73090 0.79946 1.30031 1.14185 1.14341 1.19208 1.93571 1.82070 1.46139 1.76322 1.93524 1.82180 1.44868 1.75508 1.21078 0.93317 0.97824 0.91415 1.20131 0.94019 0.93971 1.07700 1.18376 0.87483 0.84268 0.84639 1.90508 1.14715 1.87302 1.58006 1.41990 1.10010 1.05144 1.62018 1.19815 0.93680 0.83647 1.49463 0.89321 1.26263 0.96551 1.02995 0.95537 1.69678 1.07532 1.30254 1.47677 0.84800 0.77881 0.75989 0.78881 1.19528 1.19243 1.19233 0.90840 0.88989 0.91388 0.80718 0.80348 0.83914 0.82350 0.81845 0.85312 0.77013 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.73 71.24 0.62 -3.16 16 2 C 0.00 0.02 5.92 -19.60 -0.12 -0.10 16 3 C -0.14 -3.29 9.66 22.23 0.21 -3.07 16 4 C -0.01 -0.20 9.47 22.34 0.21 0.01 16 5 C -0.67 -18.26 5.65 22.23 0.13 -18.13 16 6 S 2.51 56.45 5.80 -56.49 -0.33 56.12 16 7 C -0.62 -6.80 10.80 113.37 1.22 -5.57 16 8 O -0.98 -32.53 17.12 -127.65 -2.18 -34.72 16 9 O -0.96 -24.68 17.12 -127.65 -2.18 -26.86 16 10 C -0.02 -0.58 8.95 22.54 0.20 -0.38 16 11 C -0.15 -6.26 5.87 -20.09 -0.12 -6.38 16 12 C 0.46 23.58 7.65 86.75 0.66 24.25 16 13 O -0.62 -34.01 12.92 -3.98 -0.05 -34.06 16 14 N -0.56 -30.26 5.23 -309.73 -1.62 -31.88 16 15 C -0.34 -19.41 9.68 84.10 0.81 -18.59 16 16 H 0.09 5.32 7.15 -2.91 -0.02 5.30 16 17 C -0.01 -0.66 5.50 84.96 0.47 -0.19 16 18 N -0.91 -50.21 13.05 21.68 0.28 -49.93 16 19 Si 1.00 42.70 29.55 68.60 2.03 44.73 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 25 H 0.07 2.74 5.86 -2.38 -0.01 2.72 16 26 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.18 2.59 7.56 -2.91 -0.02 2.57 16 28 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.13 4.91 5.96 -2.91 -0.02 4.89 16 32 H 0.39 20.82 5.97 -92.71 -0.55 20.27 16 33 H 0.28 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -80.10 299.44 0.86 -79.25 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.60 Total: 28.67 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.31 Total: -31.32 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.34 Total: -81.80 kcal Atomic # 8 Polarization: -91.23 SS G_CDS: -4.42 Total: -95.65 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 56.45 SS G_CDS: -0.33 Total: 56.12 kcal Total: -80.10 0.86 -79.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339924970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.475 kcal (2) G-P(sol) polarization free energy of solvation -80.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds