Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48500 * 109.47276 * 239.99566 * 3 2 1 5 5 H 1.48497 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47087 * 119.99988 * 3 2 1 7 7 C 1.37876 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47255 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46990 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54516 * 68.37577 * 11 10 9 13 13 O 1.42096 * 110.54391 * 291.61931 * 11 10 9 14 14 C 1.76200 * 104.44605 * 179.97438 * 11 10 9 15 15 C 1.38381 * 119.92788 * 270.01768 * 14 11 10 16 16 C 1.38339 * 120.29147 * 180.02562 * 15 14 11 17 17 C 1.37977 * 120.14762 * 359.70490 * 16 15 14 18 18 C 1.39555 * 119.84926 * 0.52925 * 17 16 15 19 19 C 1.47846 * 120.14561 * 179.76817 * 18 17 16 20 20 N 1.34777 * 119.99557 * 359.72046 * 19 18 17 21 21 O 1.21553 * 120.00154 * 179.72347 * 19 18 17 22 22 C 1.37935 * 119.92944 * 90.00336 * 14 11 10 23 23 H 0.97003 * 120.00158 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47451 * 59.99362 * 9 7 2 25 25 H 1.09005 * 109.47127 * 299.99857 * 9 7 2 26 26 H 1.08998 * 109.47304 * 59.99404 * 10 9 7 27 27 H 1.09001 * 109.46672 * 299.99390 * 10 9 7 28 28 H 1.08004 * 119.85575 * 0.02562 * 15 14 11 29 29 H 1.08007 * 119.92505 * 179.97438 * 16 15 14 30 30 H 1.08001 * 120.07501 * 180.27443 * 17 16 15 31 31 H 0.97001 * 120.00485 * 0.02562 * 20 19 18 32 32 H 0.97005 * 119.99790 * 179.72357 * 20 19 18 33 33 H 1.07998 * 120.06859 * 0.02562 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3384 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6649 -5.4193 1.2386 14 6 2.5963 -6.4668 0.0005 15 6 3.0885 -6.9501 -1.1991 16 6 4.0757 -7.9192 -1.2086 17 6 4.5804 -8.4059 -0.0202 18 6 4.0848 -7.9263 1.1931 19 6 4.6172 -8.4470 2.4703 20 7 5.5793 -9.3909 2.4645 21 8 4.1873 -8.0239 3.5256 22 6 3.0884 -6.9487 1.1955 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8904 27 1 2.8719 -3.6043 -0.8895 28 1 2.7003 -6.5690 -2.1322 29 1 4.4554 -8.2924 -2.1483 30 1 5.3542 -9.1592 -0.0290 31 1 5.9226 -9.7284 1.6224 32 1 5.9314 -9.7296 3.3025 33 1 2.7032 -6.5708 2.1311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357131173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -90.676305 kcal Electronic energy + Delta-G solvation = -19346.951083 eV Core-core repulsion = 16078.719874 eV Total energy + Delta-G solvation = -3268.231209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35616 -38.41959 -36.63549 -35.47583 -34.22095 -33.91813 -31.46579 -31.37601 -31.17406 -25.64342 -24.55370 -23.42680 -21.65438 -21.03828 -19.06061 -18.22788 -17.39279 -16.75957 -16.45350 -16.02562 -15.66059 -15.35552 -15.00760 -14.71082 -14.57746 -14.39737 -14.02445 -13.43541 -13.04231 -12.56317 -12.43757 -11.93932 -11.78373 -11.60895 -11.47681 -11.07059 -10.98958 -10.77410 -10.43717 -10.39506 -10.32524 -10.07371 -9.83134 -9.61500 -9.32335 -9.15688 -8.50241 -6.12700 -4.18674 0.30597 0.55821 0.82379 2.46542 3.10794 3.27995 3.28667 3.32968 3.34636 3.42447 4.26931 4.31264 4.38645 4.41178 4.50100 4.67063 4.95327 5.13104 5.22571 5.24056 5.50702 5.65095 5.66882 5.79763 5.86966 5.91548 6.36887 6.42695 6.47731 6.93648 7.28524 7.34178 7.79849 7.90737 8.15432 8.84367 9.46144 10.98206 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.004110 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.444896 B = 6810.293115 C = 7193.690428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.563 4.563 11 S 2.472 3.528 12 O -0.944 6.944 13 O -0.940 6.940 14 C -0.662 4.662 15 C 0.003 3.997 16 C -0.148 4.148 17 C -0.043 4.043 18 C -0.165 4.165 19 C 0.565 3.435 20 N -0.853 5.853 21 O -0.531 6.531 22 C 0.036 3.964 23 H 0.266 0.734 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.400 0.600 32 H 0.406 0.594 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.637 -18.680 -1.980 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.697 4.697 11 S 2.654 3.346 12 O -0.941 6.941 13 O -0.938 6.938 14 C -0.745 4.745 15 C -0.016 4.016 16 C -0.167 4.167 17 C -0.061 4.061 18 C -0.169 4.169 19 C 0.350 3.650 20 N -0.417 5.417 21 O -0.407 6.407 22 C 0.016 3.984 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.229 0.771 32 H 0.237 0.763 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.207 -18.429 -1.386 21.614 hybrid contribution 1.786 0.401 -0.149 1.836 sum 12.993 -18.028 -1.534 22.275 Atomic orbital electron populations 1.69943 1.06107 1.27377 1.49315 1.25055 0.94976 0.99512 0.94831 0.86518 0.79489 0.82478 0.78719 1.20082 1.21063 1.20044 1.20946 0.93084 0.89606 1.52516 0.91974 1.19043 0.92741 0.90243 0.99274 1.30201 1.13391 1.15384 1.10679 1.06492 0.76015 0.77296 0.74807 1.93525 1.70581 1.85515 1.44457 1.93546 1.70577 1.85375 1.44255 1.31206 1.22682 1.21957 0.98618 1.21286 0.91168 0.91909 0.97242 1.21245 0.98398 0.98693 0.98363 1.21516 0.96447 0.96241 0.91932 1.19964 1.01693 1.02136 0.93065 1.18207 0.79039 0.78892 0.88817 1.43723 1.41909 1.43458 1.12625 1.90868 1.58908 1.58477 1.32462 1.21140 0.89297 0.89993 0.97923 0.92419 0.94526 0.94476 0.85643 0.85704 0.83310 0.84326 0.85087 0.77091 0.76275 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 10 C -0.56 -10.42 5.92 37.16 0.22 -10.20 16 11 S 2.47 43.72 5.16 -107.50 -0.55 43.16 16 12 O -0.94 -18.57 17.11 -57.54 -0.98 -19.56 16 13 O -0.94 -19.48 17.12 -57.54 -0.99 -20.46 16 14 C -0.66 -9.43 5.65 -39.64 -0.22 -9.66 16 15 C 0.00 0.03 9.47 -39.49 -0.37 -0.34 16 16 C -0.15 -1.29 10.03 -39.64 -0.40 -1.69 16 17 C -0.04 -0.35 9.54 -39.19 -0.37 -0.73 16 18 C -0.16 -1.92 5.87 -104.97 -0.62 -2.54 16 19 C 0.56 6.62 8.05 -12.33 -0.10 6.52 16 20 N -0.85 -5.52 8.82 30.53 0.27 -5.25 16 21 O -0.53 -8.59 17.18 5.32 0.09 -8.50 16 22 C 0.04 0.51 9.02 -39.19 -0.35 0.16 16 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 27 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 28 H 0.15 1.54 7.56 -52.48 -0.40 1.14 16 29 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 30 H 0.13 0.51 6.41 -52.49 -0.34 0.17 16 31 H 0.40 1.26 6.86 -40.82 -0.28 0.98 16 32 H 0.41 2.10 8.93 -40.82 -0.36 1.74 16 33 H 0.16 2.39 7.16 -52.49 -0.38 2.01 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -37.40 306.23 -8.01 -45.41 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.41 Total: 0.95 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -2.77 Total: -30.92 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 1.01 Total: -30.69 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.88 Total: -48.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 43.72 SS G_CDS: -0.55 Total: 43.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.40 -8.01 -45.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357131173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.264 kcal (2) G-P(sol) polarization free energy of solvation -37.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds