Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00189 * 2 1 4 4 H 1.48506 * 109.46761 * 275.12909 * 3 2 1 5 5 H 1.48502 * 109.47028 * 35.12489 * 3 2 1 6 6 H 1.48497 * 109.47338 * 155.12711 * 3 2 1 7 7 C 1.39953 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99763 * 343.04132 * 7 2 1 9 9 C 1.41399 * 119.99621 * 163.03933 * 7 2 1 10 10 C 1.40734 * 120.24061 * 330.54580 * 9 7 2 11 11 C 1.37599 * 119.73757 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.25036 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50266 * 359.68742 * 12 11 10 14 14 C 1.37630 * 120.24531 * 0.59210 * 13 12 11 15 15 S 1.76202 * 120.12745 * 179.70280 * 14 13 12 16 16 O 1.42091 * 106.40164 * 2.06692 * 15 14 13 17 17 O 1.42105 * 106.40025 * 229.14704 * 15 14 13 18 18 N 1.65599 * 107.21735 * 115.60882 * 15 14 13 19 19 C 1.47868 * 127.11561 * 276.63402 * 18 15 14 20 20 C 1.54447 * 104.76829 * 178.92070 * 19 18 15 21 21 O 1.44689 * 103.57674 * 337.39042 * 20 19 18 22 22 C 1.44393 * 103.95156 * 38.02294 * 21 20 19 23 23 H 0.97003 * 119.99702 * 0.02562 * 1 2 3 24 24 H 1.07990 * 120.13100 * 0.02562 * 10 9 7 25 25 H 1.08007 * 119.87277 * 180.02562 * 11 10 9 26 26 H 1.08006 * 119.74612 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.87679 * 180.30052 * 13 12 11 28 28 H 1.09002 * 110.36425 * 60.10381 * 19 18 15 29 29 H 1.08996 * 110.47652 * 297.80005 * 19 18 15 30 30 H 1.09004 * 110.60638 * 218.86422 * 20 19 18 31 31 H 1.09004 * 110.60010 * 95.90884 * 20 19 18 32 32 H 1.08994 * 110.19771 * 79.34338 * 22 21 20 33 33 H 1.09000 * 110.19761 * 201.14565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3814 2.1089 -1.3946 5 1 1.4981 2.6190 0.8056 6 1 3.5898 1.4113 0.5889 7 6 2.0080 -1.2121 0.0005 8 1 1.5031 -2.1268 0.2738 9 6 3.3758 -1.2388 -0.3567 10 6 3.8905 -0.2926 -1.2624 11 6 5.2233 -0.3278 -1.6024 12 6 6.0582 -1.2910 -1.0567 13 6 5.5633 -2.2242 -0.1591 14 6 4.2323 -2.2115 0.1910 15 16 3.6050 -3.4040 1.3262 16 8 4.7139 -4.1950 1.7309 17 8 2.4370 -3.9507 0.7293 18 7 3.1010 -2.5817 2.6724 19 6 3.9344 -2.1356 3.8095 20 6 2.9545 -1.4034 4.7523 21 8 1.8659 -1.0200 3.8797 22 6 1.7264 -2.1431 2.9830 23 1 -0.4850 0.8401 -0.0004 24 1 3.2421 0.4587 -1.6883 25 1 5.6207 0.3976 -2.2970 26 1 7.1030 -1.3114 -1.3296 27 1 6.2237 -2.9670 0.2635 28 1 4.7116 -1.4531 3.4654 29 1 4.3793 -2.9924 4.3154 30 1 3.4264 -0.5221 5.1869 31 1 2.6006 -2.0752 5.5345 32 1 1.1758 -2.9476 3.4704 33 1 1.2143 -1.8355 2.0713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601427086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -84.178759 kcal Electronic energy + Delta-G solvation = -21351.882057 eV Core-core repulsion = 18083.932603 eV Total energy + Delta-G solvation = -3267.949455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.03271 -37.90982 -36.46170 -35.04631 -33.95663 -33.10625 -30.78319 -30.14871 -29.40216 -25.50732 -24.01776 -22.51236 -22.03596 -21.23770 -18.58246 -17.82355 -17.45281 -16.60235 -16.21845 -15.37220 -15.10632 -14.90326 -14.31680 -14.26526 -13.85322 -13.71123 -13.40804 -12.88641 -12.43004 -12.36422 -12.17012 -11.89418 -11.47742 -11.34144 -11.33842 -11.32217 -11.10297 -11.00108 -10.74980 -10.46211 -10.03376 -9.75389 -9.51247 -9.31605 -8.59965 -8.27375 -7.88424 -7.25504 -4.94226 1.25024 2.03884 2.49592 2.93317 3.05481 3.14238 3.68493 3.76024 4.20011 4.23751 4.60088 4.88793 5.01335 5.11931 5.18882 5.60636 5.67956 5.72314 5.79280 5.86349 5.90993 6.04345 6.17094 6.33967 6.48576 6.52620 6.65321 6.90422 7.05408 7.07727 7.22967 7.38767 7.51756 7.77754 8.04170 8.25157 8.46262 9.71579 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.011671 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.658165 B = 2398.468826 C = 3387.050559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.092 3.908 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.459 4.459 8 H 0.127 0.873 9 C 0.167 3.833 10 C -0.234 4.234 11 C -0.043 4.043 12 C -0.259 4.259 13 C 0.018 3.982 14 C -0.773 4.773 15 S 2.726 3.274 16 O -0.987 6.987 17 O -0.960 6.960 18 N -1.024 6.024 19 C 0.092 3.908 20 C 0.040 3.960 21 O -0.366 6.366 22 C 0.278 3.722 23 H 0.294 0.706 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 1.052 6.419 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.144 0.856 9 C 0.161 3.839 10 C -0.253 4.253 11 C -0.062 4.062 12 C -0.280 4.280 13 C -0.002 4.002 14 C -0.868 4.868 15 S 2.824 3.176 16 O -0.978 6.978 17 O -0.951 6.951 18 N -0.866 5.866 19 C -0.034 4.034 20 C -0.038 4.038 21 O -0.281 6.281 22 C 0.115 3.885 23 H 0.104 0.896 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.872 0.378 6.318 7.420 hybrid contribution 0.602 1.423 -0.437 1.605 sum 4.474 1.801 5.881 7.606 Atomic orbital electron populations 1.69657 1.08123 1.31229 1.30288 1.26218 0.94824 1.01919 0.90301 0.86305 0.81619 0.79392 0.78951 1.19425 1.21091 1.16398 1.20319 0.92794 0.97653 1.37754 0.85579 1.17045 0.91677 0.88165 0.86964 1.21204 0.95675 1.04143 1.04297 1.20844 0.93638 0.95789 0.95930 1.20500 0.98629 1.01615 1.07233 1.20378 0.92685 0.94565 0.92577 1.29858 1.03007 1.26842 1.27103 1.00504 0.72594 0.73025 0.71491 1.93453 1.54235 1.67297 1.82813 1.93525 1.49185 1.76856 1.75561 1.59630 1.16433 1.75594 1.34964 1.22477 0.94560 0.99098 0.87243 1.23690 0.87488 0.99589 0.93069 1.89347 1.52406 1.40254 1.46115 1.23449 0.83131 0.86705 0.95194 0.89558 0.87591 0.88221 0.88054 0.86863 0.90661 0.90303 0.88350 0.91594 0.92433 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.75 13.93 55.55 0.77 -17.98 16 2 C 0.09 2.22 5.36 -17.34 -0.09 2.13 16 3 Si 0.91 19.55 24.47 -169.99 -4.16 15.39 16 4 H -0.27 -5.54 6.70 56.52 0.38 -5.17 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.24 -5.33 6.78 56.52 0.38 -4.95 16 7 C -0.46 -11.57 6.83 -37.74 -0.26 -11.83 16 8 H 0.13 3.35 4.50 -52.49 -0.24 3.11 16 9 C 0.17 4.09 5.13 -106.82 -0.55 3.54 16 10 C -0.23 -5.42 7.12 -38.87 -0.28 -5.69 16 11 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 12 C -0.26 -5.27 10.05 -39.29 -0.39 -5.66 16 13 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 14 C -0.77 -17.90 5.96 -38.88 -0.23 -18.13 16 15 S 2.73 59.29 5.31 -107.50 -0.57 58.71 16 16 O -0.99 -21.71 16.72 -57.17 -0.96 -22.67 16 17 O -0.96 -23.31 15.34 -57.17 -0.88 -24.19 16 18 N -1.02 -19.47 3.69 -116.14 -0.43 -19.90 16 19 C 0.09 1.39 7.49 -2.53 -0.02 1.37 16 20 C 0.04 0.53 7.75 37.92 0.29 0.83 16 21 O -0.37 -6.57 11.78 -35.23 -0.42 -6.98 16 22 C 0.28 5.24 7.54 60.45 0.46 5.69 16 23 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 24 H 0.11 2.39 4.58 -52.49 -0.24 2.15 16 25 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 26 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.11 2.20 7.33 -52.49 -0.38 1.82 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.13 2.82 4.92 -51.93 -0.26 2.56 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -29.40 281.06 -7.50 -36.89 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.25 Total: 5.53 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -1.85 Total: -29.04 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.34 Total: -37.88 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -2.25 Total: -53.84 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.16 Total: 15.39 kcal Atomic # 16 Polarization: 59.29 SS G_CDS: -0.57 Total: 58.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.40 -7.50 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.287 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds