Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00189 * 2 1 4 4 H 1.48506 * 109.46761 * 275.12909 * 3 2 1 5 5 H 1.48502 * 109.47028 * 35.12489 * 3 2 1 6 6 H 1.48497 * 109.47338 * 155.12711 * 3 2 1 7 7 C 1.39953 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99763 * 343.04132 * 7 2 1 9 9 C 1.41399 * 119.99621 * 163.03933 * 7 2 1 10 10 C 1.40734 * 120.24061 * 330.54580 * 9 7 2 11 11 C 1.37599 * 119.73757 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.25036 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50266 * 359.68742 * 12 11 10 14 14 C 1.37630 * 120.24531 * 0.59210 * 13 12 11 15 15 S 1.76202 * 120.12745 * 179.70280 * 14 13 12 16 16 O 1.42091 * 106.40164 * 2.06692 * 15 14 13 17 17 O 1.42105 * 106.40025 * 229.14704 * 15 14 13 18 18 N 1.65599 * 107.21735 * 115.60882 * 15 14 13 19 19 C 1.47868 * 127.11561 * 276.63402 * 18 15 14 20 20 C 1.54447 * 104.76829 * 178.92070 * 19 18 15 21 21 O 1.44689 * 103.57674 * 337.39042 * 20 19 18 22 22 C 1.44393 * 103.95156 * 38.02294 * 21 20 19 23 23 H 0.97003 * 119.99702 * 0.02562 * 1 2 3 24 24 H 1.07990 * 120.13100 * 0.02562 * 10 9 7 25 25 H 1.08007 * 119.87277 * 180.02562 * 11 10 9 26 26 H 1.08006 * 119.74612 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.87679 * 180.30052 * 13 12 11 28 28 H 1.09002 * 110.36425 * 60.10381 * 19 18 15 29 29 H 1.08996 * 110.47652 * 297.80005 * 19 18 15 30 30 H 1.09004 * 110.60638 * 218.86422 * 20 19 18 31 31 H 1.09004 * 110.60010 * 95.90884 * 20 19 18 32 32 H 1.08994 * 110.19771 * 79.34338 * 22 21 20 33 33 H 1.09000 * 110.19761 * 201.14565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3814 2.1089 -1.3946 5 1 1.4981 2.6190 0.8056 6 1 3.5898 1.4113 0.5889 7 6 2.0080 -1.2121 0.0005 8 1 1.5031 -2.1268 0.2738 9 6 3.3758 -1.2388 -0.3567 10 6 3.8905 -0.2926 -1.2624 11 6 5.2233 -0.3278 -1.6024 12 6 6.0582 -1.2910 -1.0567 13 6 5.5633 -2.2242 -0.1591 14 6 4.2323 -2.2115 0.1910 15 16 3.6050 -3.4040 1.3262 16 8 4.7139 -4.1950 1.7309 17 8 2.4370 -3.9507 0.7293 18 7 3.1010 -2.5817 2.6724 19 6 3.9344 -2.1356 3.8095 20 6 2.9545 -1.4034 4.7523 21 8 1.8659 -1.0200 3.8797 22 6 1.7264 -2.1431 2.9830 23 1 -0.4850 0.8401 -0.0004 24 1 3.2421 0.4587 -1.6883 25 1 5.6207 0.3976 -2.2970 26 1 7.1030 -1.3114 -1.3296 27 1 6.2237 -2.9670 0.2635 28 1 4.7116 -1.4531 3.4654 29 1 4.3793 -2.9924 4.3154 30 1 3.4264 -0.5221 5.1869 31 1 2.6006 -2.0752 5.5345 32 1 1.1758 -2.9476 3.4704 33 1 1.2143 -1.8355 2.0713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601427086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = -107.082055 kcal Electronic energy + Delta-G solvation = -21352.875219 eV Core-core repulsion = 18083.932603 eV Total energy + Delta-G solvation = -3268.942616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.35580 -39.61514 -38.22498 -36.83132 -35.71639 -34.51666 -32.52045 -31.84065 -30.63484 -27.26083 -25.48098 -23.89675 -23.53234 -22.97216 -20.15547 -19.60001 -19.07156 -18.19934 -17.68355 -17.03430 -16.66583 -16.33455 -15.93549 -15.69232 -15.51214 -15.35562 -14.84700 -14.61230 -14.08894 -13.81703 -13.60769 -13.48647 -13.20597 -13.10432 -13.00808 -12.87902 -12.70853 -12.48446 -12.35350 -12.16916 -11.73371 -11.25946 -11.08970 -10.91571 -10.10251 -9.91972 -9.62483 -9.03517 -6.76475 -0.41062 0.31879 0.76673 1.21540 1.36016 1.43366 2.03014 2.10737 2.47080 2.83393 3.03094 3.27362 3.41727 3.88963 4.09124 4.17212 4.28863 4.29768 4.41671 4.49506 4.61613 4.67446 4.74591 4.84672 4.89498 5.05965 5.14156 5.21120 5.36671 5.53472 5.66349 5.80257 5.82059 6.03269 6.22465 6.49150 6.66194 7.99486 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.011671 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.658165 B = 2398.468826 C = 3387.050559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.066 3.934 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.149 3.851 10 C -0.260 4.260 11 C -0.040 4.040 12 C -0.250 4.250 13 C 0.004 3.996 14 C -0.790 4.790 15 S 2.742 3.258 16 O -0.991 6.991 17 O -0.995 6.995 18 N -1.027 6.027 19 C 0.080 3.920 20 C 0.039 3.961 21 O -0.387 6.387 22 C 0.278 3.722 23 H 0.302 0.698 24 H 0.107 0.893 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 1.974 7.103 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.156 4.156 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.175 1.175 7 C -0.511 4.511 8 H 0.118 0.882 9 C 0.144 3.856 10 C -0.280 4.280 11 C -0.059 4.059 12 C -0.269 4.269 13 C -0.016 4.016 14 C -0.884 4.884 15 S 2.839 3.161 16 O -0.982 6.982 17 O -0.986 6.986 18 N -0.871 5.871 19 C -0.045 4.045 20 C -0.038 4.038 21 O -0.303 6.303 22 C 0.116 3.884 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.150 0.850 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.144 0.856 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.207 1.302 6.997 9.444 hybrid contribution 0.042 1.062 -0.610 1.226 sum 6.249 2.365 6.388 9.243 Atomic orbital electron populations 1.69669 1.08984 1.32288 1.31929 1.26731 0.95274 1.03766 0.89779 0.85660 0.80086 0.76912 0.79585 1.18052 1.20049 1.17496 1.20217 0.93566 0.97363 1.39967 0.88191 1.17268 0.91644 0.89186 0.87474 1.21374 0.97165 1.04518 1.04909 1.21313 0.92639 0.96247 0.95663 1.21019 1.00467 1.00114 1.05349 1.20753 0.92264 0.95538 0.93056 1.30163 1.03906 1.26521 1.27775 0.99841 0.71824 0.72881 0.71550 1.93433 1.54210 1.67602 1.82961 1.93478 1.50476 1.77895 1.76717 1.59379 1.17260 1.75437 1.35042 1.22865 0.94737 1.00424 0.86461 1.24036 0.85905 1.01328 0.92524 1.89320 1.53946 1.40263 1.46734 1.23321 0.82986 0.87592 0.94527 0.88707 0.87523 0.84383 0.84184 0.84998 0.90419 0.87848 0.85630 0.88625 0.90192 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.59 13.93 21.83 0.30 -40.29 16 2 C 0.07 3.26 5.36 85.26 0.46 3.72 16 3 Si 0.95 40.01 24.47 68.60 1.68 41.69 16 4 H -0.26 -10.04 6.70 99.48 0.67 -9.37 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.25 -10.83 6.78 99.48 0.67 -10.16 16 7 C -0.48 -25.33 6.83 23.46 0.16 -25.17 16 8 H 0.10 5.66 4.50 -2.91 -0.01 5.65 16 9 C 0.15 7.37 5.13 -21.29 -0.11 7.26 16 10 C -0.26 -11.78 7.12 22.73 0.16 -11.61 16 11 C -0.04 -1.55 10.02 22.22 0.22 -1.33 16 12 C -0.25 -9.22 10.05 22.46 0.23 -8.99 16 13 C 0.00 0.15 9.53 22.22 0.21 0.36 16 14 C -0.79 -36.33 5.96 22.73 0.14 -36.19 16 15 S 2.74 120.01 5.31 -56.49 -0.30 119.71 16 16 O -0.99 -42.72 16.72 -128.00 -2.14 -44.86 16 17 O -0.99 -50.14 15.34 -128.00 -1.96 -52.10 16 18 N -1.03 -38.76 3.69 -620.20 -2.29 -41.05 16 19 C 0.08 2.24 7.49 86.61 0.65 2.89 16 20 C 0.04 0.95 7.75 72.47 0.56 1.51 16 21 O -0.39 -13.62 11.78 -148.98 -1.76 -15.37 16 22 C 0.28 10.65 7.54 127.56 0.96 11.61 16 23 H 0.30 13.56 8.30 -92.71 -0.77 12.79 16 24 H 0.11 4.71 4.58 -2.92 -0.01 4.70 16 25 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 26 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 27 H 0.13 4.79 7.33 -2.91 -0.02 4.77 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.10 4.38 4.92 -2.39 -0.01 4.37 16 Total: -1.00 -64.50 281.06 -1.75 -66.25 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.08 Total: 21.97 kcal Atomic # 6 Polarization: -59.58 SS G_CDS: 3.64 Total: -55.94 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.99 Total: -81.34 kcal Atomic # 8 Polarization: -106.48 SS G_CDS: -5.86 Total: -112.34 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.68 Total: 41.69 kcal Atomic # 16 Polarization: 120.01 SS G_CDS: -0.30 Total: 119.71 kcal Total: -64.50 -1.75 -66.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.827 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds