Wall clock time and date at job start Wed Apr 15 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99658 * 2 1 4 4 H 1.48496 * 109.46942 * 269.99971 * 3 2 1 5 5 H 1.48495 * 109.47188 * 30.00101 * 3 2 1 6 6 H 1.48498 * 109.46936 * 149.99910 * 3 2 1 7 7 C 1.38945 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00333 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00086 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00061 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99857 * 179.97438 * 10 9 7 13 13 O 1.45205 * 109.47336 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00187 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99885 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47110 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.96998 * 120.00238 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99550 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47732 * 59.99918 * 12 10 9 26 26 H 1.09005 * 109.47197 * 299.99667 * 12 10 9 27 27 H 1.09000 * 109.47543 * 59.99651 * 16 14 13 28 28 H 1.09008 * 109.47338 * 300.00164 * 16 14 13 29 29 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 30 30 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 31 31 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 32 32 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 33 33 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 8 6.0449 -3.7393 -0.0006 14 6 7.3756 -3.9151 -0.0002 15 8 8.1116 -2.9569 0.0003 16 6 7.9516 -5.3076 -0.0002 17 6 9.4795 -5.2275 0.0010 18 6 10.0556 -6.6201 0.0017 19 6 10.3504 -7.3308 -1.0880 20 6 10.8713 -8.5891 -0.8404 21 6 11.0001 -8.9001 0.4503 22 16 10.4491 -7.5540 1.4391 23 1 -0.4850 0.8400 0.0004 24 1 3.8648 -0.3632 0.0004 25 1 5.9242 -1.8565 0.8899 26 1 5.9241 -1.8565 -0.8901 27 1 7.6160 -5.8397 -0.8903 28 1 7.6154 -5.8400 0.8896 29 1 9.8147 -4.6957 0.8915 30 1 9.8161 -4.6951 -0.8885 31 1 10.1942 -6.9531 -2.0876 32 1 11.1530 -9.2673 -1.6323 33 1 11.3872 -9.8341 0.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:02 Heat of formation + Delta-G solvation = -90.676246 kcal Electronic energy + Delta-G solvation = -18499.459735 eV Core-core repulsion = 15231.228528 eV Total energy + Delta-G solvation = -3268.231207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47410 -38.47242 -38.15919 -36.31959 -34.06611 -34.05515 -31.80471 -29.68191 -28.35828 -25.60552 -24.35279 -22.93553 -20.66502 -19.64966 -19.54683 -18.59287 -17.98173 -17.02940 -16.68030 -16.31662 -15.79239 -15.43052 -14.88690 -14.85596 -13.85291 -13.82513 -13.46986 -13.13239 -12.92182 -12.69694 -12.52620 -12.40118 -12.24086 -12.21619 -11.98617 -11.37593 -11.26894 -10.97229 -10.65505 -10.53233 -10.52663 -10.05342 -9.68045 -8.97441 -8.77054 -8.66837 -8.29670 -6.39483 -3.92458 0.67193 1.32755 1.70739 2.21452 2.39845 2.67556 2.98490 3.03127 3.11854 3.55246 4.03428 4.26507 4.58145 4.62799 4.72358 4.79212 5.01057 5.10746 5.15073 5.25346 5.33040 5.40712 5.48125 5.54874 5.67617 5.72862 5.84379 5.98625 6.18661 6.51625 7.44455 7.77665 8.00701 8.47608 8.83467 9.29614 9.65403 10.72791 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.048472 B = 0.002562 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.513157 B =10925.555792 C =11166.818329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.447 3.553 11 O -0.557 6.557 12 C 0.058 3.942 13 O -0.324 6.324 14 C 0.460 3.540 15 O -0.516 6.516 16 C -0.109 4.109 17 C -0.037 4.037 18 C -0.173 4.173 19 C -0.137 4.137 20 C -0.134 4.134 21 C -0.216 4.216 22 S 0.100 5.900 23 H 0.275 0.725 24 H 0.373 0.627 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.175 -11.843 -0.015 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.232 3.768 11 O -0.439 6.439 12 C -0.020 4.020 13 O -0.239 6.239 14 C 0.303 3.697 15 O -0.406 6.406 16 C -0.147 4.147 17 C -0.077 4.077 18 C -0.290 4.290 19 C -0.168 4.168 20 C -0.164 4.164 21 C -0.352 4.352 22 S 0.363 5.637 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 22.637 -11.892 1.548 25.617 hybrid contribution 0.722 1.209 -1.495 2.054 sum 23.359 -10.683 0.052 25.686 Atomic orbital electron populations 1.69613 1.05649 1.27763 1.48394 1.25041 0.95527 0.98071 0.97280 0.86673 0.79855 0.83855 0.79089 1.19407 1.19947 1.19355 1.19424 0.78681 0.96878 1.48657 0.86012 1.42039 1.07645 1.05719 1.66589 1.19205 0.86973 0.85128 0.85478 1.90606 1.69052 1.30722 1.53492 1.22751 0.95114 0.80567 1.03579 1.86567 1.23238 1.31186 1.82864 1.23688 0.81049 0.92563 0.72377 1.90654 1.60660 1.43160 1.46084 1.21377 0.94952 0.91547 1.06811 1.19936 0.92248 0.90266 1.05218 1.24438 1.07938 1.00811 0.95846 1.20192 1.02497 0.94587 0.99493 1.20187 1.02488 0.97280 0.96453 1.25639 1.09432 1.03208 0.96920 1.84402 1.61689 1.07931 1.09641 0.91384 0.79387 0.89413 0.89404 0.87041 0.87283 0.89628 0.88794 0.84086 0.84279 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.96 55.50 0.77 -24.36 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.02 27.74 -169.99 -4.71 14.30 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 7 C -0.31 -8.62 10.16 -14.94 -0.15 -8.77 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 9 N -0.58 -13.76 5.09 -10.97 -0.06 -13.82 16 10 C 0.45 10.35 7.86 -10.99 -0.09 10.27 16 11 O -0.56 -15.32 16.08 -14.11 -0.23 -15.55 16 12 C 0.06 1.02 5.94 36.00 0.21 1.24 16 13 O -0.32 -5.68 9.76 -45.90 -0.45 -6.13 16 14 C 0.46 6.56 7.96 36.00 0.29 6.84 16 15 O -0.52 -8.16 15.73 -18.75 -0.29 -8.45 16 16 C -0.11 -1.10 5.79 -27.89 -0.16 -1.26 16 17 C -0.04 -0.34 5.00 -27.88 -0.14 -0.48 16 18 C -0.17 -1.52 5.76 -36.00 -0.21 -1.73 16 19 C -0.14 -1.12 10.05 -41.21 -0.41 -1.53 16 20 C -0.13 -1.00 10.18 -41.21 -0.42 -1.42 16 21 C -0.22 -1.60 11.23 29.04 0.33 -1.27 16 22 S 0.10 0.83 23.33 -107.50 -2.51 -1.68 16 23 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 25 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 26 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -33.47 312.22 -7.21 -40.68 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.59 Total: 7.31 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.85 Total: 2.99 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.72 Total: -38.18 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.97 Total: -30.14 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.30 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.47 -7.21 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.995 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds