Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99658 * 2 1 4 4 H 1.48496 * 109.46942 * 269.99971 * 3 2 1 5 5 H 1.48495 * 109.47188 * 30.00101 * 3 2 1 6 6 H 1.48498 * 109.46936 * 149.99910 * 3 2 1 7 7 C 1.38945 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99632 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00333 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00086 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00061 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99857 * 179.97438 * 10 9 7 13 13 O 1.45205 * 109.47336 * 180.02562 * 12 10 9 14 14 C 1.34228 * 117.00187 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99885 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47110 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.96998 * 120.00238 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99550 * 359.97438 * 9 7 2 25 25 H 1.08995 * 109.47732 * 59.99918 * 12 10 9 26 26 H 1.09005 * 109.47197 * 299.99667 * 12 10 9 27 27 H 1.09000 * 109.47543 * 59.99651 * 16 14 13 28 28 H 1.09008 * 109.47338 * 300.00164 * 16 14 13 29 29 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 30 30 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 31 31 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 32 32 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 33 33 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 8 6.0449 -3.7393 -0.0006 14 6 7.3756 -3.9151 -0.0002 15 8 8.1116 -2.9569 0.0003 16 6 7.9516 -5.3076 -0.0002 17 6 9.4795 -5.2275 0.0010 18 6 10.0556 -6.6201 0.0017 19 6 10.3504 -7.3308 -1.0880 20 6 10.8713 -8.5891 -0.8404 21 6 11.0001 -8.9001 0.4503 22 16 10.4491 -7.5540 1.4391 23 1 -0.4850 0.8400 0.0004 24 1 3.8648 -0.3632 0.0004 25 1 5.9242 -1.8565 0.8899 26 1 5.9241 -1.8565 -0.8901 27 1 7.6160 -5.8397 -0.8903 28 1 7.6154 -5.8400 0.8896 29 1 9.8147 -4.6957 0.8915 30 1 9.8161 -4.6951 -0.8885 31 1 10.1942 -6.9531 -2.0876 32 1 11.1530 -9.2673 -1.6323 33 1 11.3872 -9.8341 0.8300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -112.049758 kcal Electronic energy + Delta-G solvation = -18500.386560 eV Core-core repulsion = 15231.228528 eV Total energy + Delta-G solvation = -3269.158032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70588 -40.21720 -38.86647 -37.60762 -36.09470 -34.82852 -33.87455 -30.75826 -29.56029 -26.77246 -25.85589 -23.66980 -21.75359 -21.54607 -20.52936 -20.13067 -19.02172 -17.94389 -17.86104 -17.80812 -17.17241 -16.60743 -16.31972 -16.05438 -15.40581 -15.04285 -14.75530 -14.30629 -14.24021 -13.94239 -13.73340 -13.54086 -13.21863 -13.06901 -12.99318 -12.88997 -12.46786 -12.06404 -12.01042 -11.85138 -11.67917 -11.59644 -11.57493 -10.61864 -10.35084 -9.57640 -9.38074 -8.46762 -6.10126 0.07193 0.72966 1.09880 1.12818 1.29290 1.33220 1.38455 1.46160 1.75045 1.88933 2.19734 2.81086 3.07534 3.55175 3.85499 3.87795 4.00219 4.06976 4.14507 4.18415 4.29812 4.47461 4.62803 4.73196 4.85710 5.01233 5.26029 5.31851 5.41522 5.47908 5.62045 5.84434 6.45500 6.63297 6.76774 7.24795 7.76859 8.69852 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.048472 B = 0.002562 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.513157 B =10925.555792 C =11166.818329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.334 4.334 8 H 0.060 0.940 9 N -0.576 5.576 10 C 0.447 3.553 11 O -0.609 6.609 12 C 0.067 3.933 13 O -0.348 6.348 14 C 0.463 3.537 15 O -0.530 6.530 16 C -0.102 4.102 17 C -0.029 4.029 18 C -0.187 4.187 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.215 4.215 22 S 0.079 5.921 23 H 0.282 0.718 24 H 0.393 0.607 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.120 -10.879 -0.340 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.155 1.155 7 C -0.463 4.463 8 H 0.078 0.922 9 N -0.218 5.218 10 C 0.234 3.766 11 O -0.494 6.494 12 C -0.010 4.010 13 O -0.263 6.263 14 C 0.308 3.692 15 O -0.420 6.420 16 C -0.140 4.140 17 C -0.069 4.069 18 C -0.304 4.304 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.350 4.350 22 S 0.343 5.657 23 H 0.092 0.908 24 H 0.229 0.771 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 25.616 -10.931 1.225 27.878 hybrid contribution -0.209 0.747 -1.408 1.608 sum 25.407 -10.184 -0.183 27.373 Atomic orbital electron populations 1.69782 1.08085 1.29588 1.49035 1.26107 0.96484 1.02690 0.95560 0.85404 0.79553 0.76686 0.80191 1.17878 1.19666 1.15474 1.19001 0.80766 0.95327 1.51169 0.92170 1.41821 1.06122 1.07046 1.66820 1.20232 0.89459 0.83992 0.82882 1.90581 1.71003 1.32648 1.55181 1.22591 0.90466 0.81681 1.06256 1.86576 1.25304 1.30923 1.83533 1.24368 0.79645 0.93868 0.71335 1.90644 1.60513 1.43997 1.46827 1.21500 0.95453 0.89113 1.07918 1.19837 0.91309 0.90649 1.05074 1.24403 1.09089 1.00786 0.96142 1.20470 1.01724 0.94792 0.99949 1.20468 1.02347 0.97418 0.97084 1.25951 1.08820 1.03456 0.96768 1.84464 1.62206 1.08834 1.10228 0.90796 0.77063 0.86673 0.86480 0.85558 0.86373 0.90168 0.88594 0.82835 0.82292 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.96 21.66 0.30 -54.39 16 2 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 3 Si 0.96 37.83 27.74 68.60 1.90 39.73 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.23 -7.67 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 8 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 9 N -0.58 -27.10 5.09 -307.00 -1.56 -28.66 16 10 C 0.45 20.68 7.86 87.66 0.69 21.37 16 11 O -0.61 -34.71 16.08 15.74 0.25 -34.46 16 12 C 0.07 2.24 5.94 71.23 0.42 2.66 16 13 O -0.35 -11.71 9.76 -45.05 -0.44 -12.15 16 14 C 0.46 12.33 7.96 71.23 0.57 12.89 16 15 O -0.53 -15.51 15.73 21.98 0.35 -15.17 16 16 C -0.10 -1.89 5.79 29.85 0.17 -1.72 16 17 C -0.03 -0.49 5.00 29.85 0.15 -0.34 16 18 C -0.19 -2.99 5.76 24.59 0.14 -2.84 16 19 C -0.14 -1.98 10.05 21.22 0.21 -1.77 16 20 C -0.14 -1.82 10.18 21.22 0.22 -1.60 16 21 C -0.21 -2.75 11.23 66.72 0.75 -2.00 16 22 S 0.08 1.23 23.33 -56.49 -1.32 -0.09 16 23 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.39 15.12 5.76 -92.71 -0.53 14.58 16 25 H 0.12 3.25 8.13 -2.39 -0.02 3.23 16 26 H 0.12 3.26 8.13 -2.38 -0.02 3.24 16 27 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -76.45 312.22 4.68 -71.77 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.55 Total: 25.24 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.64 Total: 8.18 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.26 Total: -83.05 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: 0.16 Total: -61.78 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -1.32 Total: -0.09 kcal Total: -76.45 4.68 -71.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.280 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds