Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36938 * 119.99848 * 2 1 4 4 H 1.08001 * 119.99450 * 203.09744 * 3 2 1 5 5 C 1.38803 * 120.00227 * 23.09750 * 3 2 1 6 6 N 1.31626 * 120.00072 * 11.88963 * 5 3 2 7 7 Si 1.86800 * 120.00078 * 191.88273 * 5 3 2 8 8 H 1.48499 * 109.46950 * 60.00743 * 7 5 3 9 9 H 1.48504 * 109.47136 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47259 * 300.00113 * 7 5 3 11 11 S 1.65604 * 119.99970 * 180.02562 * 2 1 3 12 12 O 1.42096 * 106.40024 * 336.45908 * 11 2 1 13 13 O 1.42094 * 106.40166 * 203.53922 * 11 2 1 14 14 C 1.76200 * 107.21698 * 89.99584 * 11 2 1 15 15 C 1.38265 * 119.97750 * 90.00347 * 14 11 2 16 16 C 1.38297 * 120.04183 * 180.02562 * 15 14 11 17 17 C 1.37970 * 119.91736 * 0.02562 * 16 15 14 18 18 C 1.38590 * 120.04307 * 359.97438 * 17 16 15 19 19 C 1.37976 * 120.03863 * 0.20882 * 18 17 16 20 20 C 1.51080 * 107.27657 * 179.97438 * 18 17 16 21 21 O 1.43947 * 105.94999 * 17.68414 * 20 18 17 22 22 C 1.43938 * 104.95474 * 331.55843 * 21 20 18 23 23 H 1.09004 * 109.46550 * 275.05484 * 1 2 3 24 24 H 1.08998 * 109.46998 * 35.05093 * 1 2 3 25 25 H 1.09000 * 109.46915 * 155.05869 * 1 2 3 26 26 H 0.97001 * 119.99614 * 179.97438 * 6 5 3 27 27 H 1.08005 * 119.97556 * 0.02562 * 15 14 11 28 28 H 1.08004 * 120.03799 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.04306 * 179.68460 * 19 18 17 30 30 H 1.08996 * 110.15297 * 136.80378 * 20 18 17 31 31 H 1.08995 * 110.15436 * 258.56245 * 20 18 17 32 32 H 1.08998 * 110.15711 * 147.56335 * 22 21 20 33 33 H 1.09006 * 110.15403 * 269.25202 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1648 1.2233 -0.3669 5 6 1.5392 2.3398 0.4716 6 7 0.4022 2.2608 1.1300 7 14 2.3312 4.0049 0.1719 8 1 2.4571 4.2373 -1.2893 9 1 1.4875 5.0695 0.7720 10 1 3.6787 4.0315 0.7955 11 16 2.2931 -1.4342 -0.0006 12 8 1.4114 -2.4067 0.5434 13 8 3.5760 -1.1571 0.5439 14 6 2.5537 -1.8851 -1.6839 15 6 3.6932 -1.4632 -2.3437 16 6 3.8989 -1.8159 -3.6650 17 6 2.9654 -2.5890 -4.3242 18 6 1.8232 -3.0120 -3.6629 19 6 1.6162 -2.6569 -2.3458 20 6 1.0131 -3.8275 -4.6433 21 8 1.9198 -4.1891 -5.7012 22 6 2.8948 -3.1306 -5.7328 23 1 -0.3632 0.0906 1.0237 24 1 -0.3633 0.8413 -0.5902 25 1 -0.3633 -0.9318 -0.4334 26 1 -0.0243 3.0672 1.4598 27 1 4.4231 -0.8577 -1.8268 28 1 4.7888 -1.4859 -4.1804 29 1 0.7237 -2.9822 -1.8319 30 1 0.6266 -4.7233 -4.1574 31 1 0.1920 -3.2306 -5.0400 32 1 3.8661 -3.5236 -6.0331 33 1 2.5773 -2.3479 -6.4218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330844502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -66.694233 kcal Electronic energy + Delta-G solvation = -20354.976478 eV Core-core repulsion = 17087.785209 eV Total energy + Delta-G solvation = -3267.191269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68865 -37.39315 -36.35014 -35.47843 -34.91842 -31.68146 -31.43250 -31.15377 -28.01679 -26.29454 -24.99459 -23.45805 -21.94965 -21.81140 -18.60938 -17.67484 -16.91883 -16.49959 -16.45921 -16.34893 -15.88696 -14.75322 -14.44830 -14.37084 -14.02053 -13.61286 -13.21672 -13.05506 -12.87238 -12.64180 -12.37934 -11.92986 -11.83801 -11.30246 -11.23181 -11.19624 -11.05389 -10.91290 -10.65123 -10.42065 -10.33239 -10.27638 -10.03362 -9.14909 -9.00447 -8.72787 -7.94521 -6.14016 -3.87299 0.83014 1.30340 1.36703 3.24267 3.28837 3.30164 3.41621 3.72850 4.04256 4.13258 4.42261 4.44603 4.65380 4.83216 5.07169 5.13779 5.16303 5.21748 5.30840 5.36892 5.41381 5.62315 5.74640 6.00325 6.11767 6.13304 6.24136 6.29330 6.50788 6.84727 6.87982 7.16586 7.49289 7.65766 8.45548 9.01712 9.38519 10.89837 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.005683 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.957948 B = 4925.553791 C = 5275.630848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.850 5.850 3 C -0.320 4.320 4 H 0.096 0.904 5 C 0.041 3.959 6 N -0.886 5.886 7 Si 0.917 3.083 8 H -0.277 1.277 9 H -0.285 1.285 10 H -0.273 1.273 11 S 2.675 3.325 12 O -0.981 6.981 13 O -0.962 6.962 14 C -0.660 4.660 15 C -0.009 4.009 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.161 4.161 19 C 0.002 3.998 20 C 0.094 3.906 21 O -0.363 6.363 22 C 0.088 3.912 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.023 0.977 26 H 0.264 0.736 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -7.059 -11.490 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.685 5.685 3 C -0.450 4.450 4 H 0.114 0.886 5 C -0.164 4.164 6 N -0.526 5.526 7 Si 0.743 3.257 8 H -0.202 1.202 9 H -0.210 1.210 10 H -0.198 1.198 11 S 2.763 3.237 12 O -0.971 6.971 13 O -0.952 6.952 14 C -0.742 4.742 15 C -0.028 4.028 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.162 4.162 19 C -0.017 4.017 20 C 0.017 3.983 21 O -0.281 6.281 22 C 0.012 3.988 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.080 -7.638 -10.864 13.442 hybrid contribution 0.257 1.301 -0.820 1.559 sum 2.337 -6.337 -11.684 13.496 Atomic orbital electron populations 1.21141 0.79607 0.97730 1.02613 1.52648 1.12833 1.17932 1.85092 1.19041 0.98857 0.84808 1.42301 0.88629 1.25117 0.96592 0.99109 0.95538 1.70054 1.18095 1.28778 1.35669 0.86182 0.79119 0.81892 0.78458 1.20229 1.21008 1.19821 1.02269 0.73697 0.73247 0.74534 1.93488 1.66298 1.61177 1.76167 1.93488 1.41257 1.84776 1.75660 1.31903 1.02602 1.10396 1.29255 1.20990 0.94688 0.93615 0.93528 1.20492 0.99124 0.99377 0.94653 1.21251 0.95278 0.96785 0.96151 1.21069 0.97363 1.02266 0.95514 1.20113 0.97311 0.92309 0.91931 1.21750 0.91738 0.98892 0.85887 1.89064 1.40654 1.44425 1.53966 1.21816 0.94021 0.90342 0.92619 0.91796 0.91940 0.95892 0.92537 0.83579 0.85056 0.84225 0.88246 0.90284 0.88254 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.10 8.60 59.85 0.51 3.62 16 2 N -0.85 -20.58 3.31 -66.68 -0.22 -20.80 16 3 C -0.32 -8.31 9.17 -15.06 -0.14 -8.45 16 4 H 0.10 2.38 7.68 -52.49 -0.40 1.98 16 5 C 0.04 1.07 5.12 -17.43 -0.09 0.98 16 6 N -0.89 -23.85 10.65 55.49 0.59 -23.26 16 7 Si 0.92 20.25 29.57 -169.99 -5.03 15.22 16 8 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 S 2.68 58.84 5.60 -107.50 -0.60 58.23 16 12 O -0.98 -22.53 16.26 -57.18 -0.93 -23.46 16 13 O -0.96 -23.25 16.37 -57.18 -0.94 -24.19 16 14 C -0.66 -12.14 5.98 -39.55 -0.24 -12.37 16 15 C -0.01 -0.15 9.52 -39.55 -0.38 -0.53 16 16 C -0.12 -1.63 10.04 -39.66 -0.40 -2.03 16 17 C -0.09 -1.28 6.32 -104.40 -0.66 -1.94 16 18 C -0.16 -2.34 6.32 -104.40 -0.66 -3.00 16 19 C 0.00 0.04 9.52 -39.66 -0.38 -0.34 16 20 C 0.09 1.10 7.63 36.19 0.28 1.37 16 21 O -0.36 -4.53 11.72 -35.23 -0.41 -4.95 16 22 C 0.09 0.96 7.63 36.19 0.28 1.23 16 23 H 0.06 1.57 7.35 -51.93 -0.38 1.19 16 24 H 0.06 1.46 7.31 -51.93 -0.38 1.08 16 25 H 0.02 0.44 7.61 -51.93 -0.39 0.05 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.15 2.33 7.62 -52.48 -0.40 1.93 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.14 2.13 7.63 -52.49 -0.40 1.72 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -31.55 294.78 -8.57 -40.13 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -3.61 Total: 0.09 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -1.87 Total: -21.46 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.37 Total: -44.06 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.28 Total: -52.60 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Atomic # 16 Polarization: 58.84 SS G_CDS: -0.60 Total: 58.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.55 -8.57 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330844502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.568 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds