Wall clock time and date at job start Wed Apr 15 2020 11:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36938 * 119.99848 * 2 1 4 4 H 1.08001 * 119.99450 * 203.09744 * 3 2 1 5 5 C 1.38803 * 120.00227 * 23.09750 * 3 2 1 6 6 N 1.31626 * 120.00072 * 11.88963 * 5 3 2 7 7 Si 1.86800 * 120.00078 * 191.88273 * 5 3 2 8 8 H 1.48499 * 109.46950 * 60.00743 * 7 5 3 9 9 H 1.48504 * 109.47136 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47259 * 300.00113 * 7 5 3 11 11 S 1.65604 * 119.99970 * 180.02562 * 2 1 3 12 12 O 1.42096 * 106.40024 * 336.45908 * 11 2 1 13 13 O 1.42094 * 106.40166 * 203.53922 * 11 2 1 14 14 C 1.76200 * 107.21698 * 89.99584 * 11 2 1 15 15 C 1.38265 * 119.97750 * 90.00347 * 14 11 2 16 16 C 1.38297 * 120.04183 * 180.02562 * 15 14 11 17 17 C 1.37970 * 119.91736 * 0.02562 * 16 15 14 18 18 C 1.38590 * 120.04307 * 359.97438 * 17 16 15 19 19 C 1.37976 * 120.03863 * 0.20882 * 18 17 16 20 20 C 1.51080 * 107.27657 * 179.97438 * 18 17 16 21 21 O 1.43947 * 105.94999 * 17.68414 * 20 18 17 22 22 C 1.43938 * 104.95474 * 331.55843 * 21 20 18 23 23 H 1.09004 * 109.46550 * 275.05484 * 1 2 3 24 24 H 1.08998 * 109.46998 * 35.05093 * 1 2 3 25 25 H 1.09000 * 109.46915 * 155.05869 * 1 2 3 26 26 H 0.97001 * 119.99614 * 179.97438 * 6 5 3 27 27 H 1.08005 * 119.97556 * 0.02562 * 15 14 11 28 28 H 1.08004 * 120.03799 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.04306 * 179.68460 * 19 18 17 30 30 H 1.08996 * 110.15297 * 136.80378 * 20 18 17 31 31 H 1.08995 * 110.15436 * 258.56245 * 20 18 17 32 32 H 1.08998 * 110.15711 * 147.56335 * 22 21 20 33 33 H 1.09006 * 110.15403 * 269.25202 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1648 1.2233 -0.3669 5 6 1.5392 2.3398 0.4716 6 7 0.4022 2.2608 1.1300 7 14 2.3312 4.0049 0.1719 8 1 2.4571 4.2373 -1.2893 9 1 1.4875 5.0695 0.7720 10 1 3.6787 4.0315 0.7955 11 16 2.2931 -1.4342 -0.0006 12 8 1.4114 -2.4067 0.5434 13 8 3.5760 -1.1571 0.5439 14 6 2.5537 -1.8851 -1.6839 15 6 3.6932 -1.4632 -2.3437 16 6 3.8989 -1.8159 -3.6650 17 6 2.9654 -2.5890 -4.3242 18 6 1.8232 -3.0120 -3.6629 19 6 1.6162 -2.6569 -2.3458 20 6 1.0131 -3.8275 -4.6433 21 8 1.9198 -4.1891 -5.7012 22 6 2.8948 -3.1306 -5.7328 23 1 -0.3632 0.0906 1.0237 24 1 -0.3633 0.8413 -0.5902 25 1 -0.3633 -0.9318 -0.4334 26 1 -0.0243 3.0672 1.4598 27 1 4.4231 -0.8577 -1.8268 28 1 4.7888 -1.4859 -4.1804 29 1 0.7237 -2.9822 -1.8319 30 1 0.6266 -4.7233 -4.1574 31 1 0.1920 -3.2306 -5.0400 32 1 3.8661 -3.5236 -6.0331 33 1 2.5773 -2.3479 -6.4218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330844502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:35 Heat of formation + Delta-G solvation = -89.012085 kcal Electronic energy + Delta-G solvation = -20355.944253 eV Core-core repulsion = 17087.785209 eV Total energy + Delta-G solvation = -3268.159043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72085 -38.47419 -38.15930 -37.35204 -36.74174 -33.12803 -32.79822 -32.55112 -28.98543 -28.20004 -26.09371 -25.35569 -23.17107 -22.85279 -20.35354 -19.31088 -18.45222 -18.25979 -17.60021 -17.44713 -16.98452 -16.44228 -16.14965 -15.56362 -15.29594 -15.03335 -14.74426 -14.49625 -14.18762 -13.82304 -13.67566 -13.46617 -13.13757 -13.08411 -13.07177 -12.93130 -12.67554 -12.44199 -12.26316 -12.23222 -11.94124 -11.76967 -11.27281 -10.99650 -10.20295 -9.90411 -9.80685 -8.09802 -5.88041 -0.50238 -0.24879 0.13261 1.48575 1.50868 1.57970 2.12922 2.40126 2.64503 2.85394 2.89100 3.04748 3.20418 3.38726 3.69133 3.77775 4.10825 4.23819 4.33746 4.38550 4.45050 4.49850 4.65428 4.70913 4.82957 4.94962 4.99954 5.01578 5.10591 5.26938 5.52893 5.54593 5.70907 5.75258 6.51007 7.07725 7.41322 8.93299 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.005683 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.957948 B = 4925.553791 C = 5275.630848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.871 5.871 3 C -0.333 4.333 4 H 0.099 0.901 5 C -0.010 4.010 6 N -0.915 5.915 7 Si 0.979 3.021 8 H -0.264 1.264 9 H -0.283 1.283 10 H -0.271 1.271 11 S 2.683 3.317 12 O -1.003 7.003 13 O -0.995 6.995 14 C -0.670 4.670 15 C -0.028 4.028 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.167 4.167 19 C -0.012 4.012 20 C 0.094 3.906 21 O -0.373 6.373 22 C 0.089 3.911 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.264 0.736 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -7.368 -14.518 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.705 5.705 3 C -0.463 4.463 4 H 0.116 0.884 5 C -0.211 4.211 6 N -0.556 5.556 7 Si 0.803 3.197 8 H -0.189 1.189 9 H -0.209 1.209 10 H -0.197 1.197 11 S 2.778 3.222 12 O -0.993 6.993 13 O -0.985 6.985 14 C -0.758 4.758 15 C -0.047 4.047 16 C -0.129 4.129 17 C -0.089 4.089 18 C -0.168 4.168 19 C -0.032 4.032 20 C 0.018 3.982 21 O -0.292 6.292 22 C 0.013 3.987 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.188 0.812 29 H 0.162 0.838 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.865 -7.945 -13.837 16.211 hybrid contribution 0.055 1.255 0.011 1.257 sum 2.920 -6.690 -13.826 15.634 Atomic orbital electron populations 1.20979 0.79328 0.98826 1.01076 1.52712 1.13157 1.18071 1.86593 1.19357 0.99474 0.85557 1.41893 0.88379 1.26001 0.97253 1.02517 0.95319 1.70194 1.19254 1.29517 1.36639 0.85224 0.78053 0.77559 0.78896 1.18860 1.20871 1.19656 1.01692 0.72669 0.72522 0.75304 1.93442 1.66626 1.61521 1.77695 1.93431 1.42514 1.85113 1.77469 1.31023 1.04872 1.13350 1.26604 1.21170 0.94206 0.94206 0.95101 1.20823 1.00379 0.98402 0.93326 1.21770 0.94253 0.95241 0.97665 1.21416 0.98403 1.02077 0.94926 1.20208 0.97212 0.92584 0.93169 1.21896 0.91639 0.99430 0.85204 1.89067 1.41110 1.45163 1.53888 1.22073 0.95110 0.90697 0.90829 0.94405 0.92802 0.92983 0.92641 0.83761 0.81229 0.83828 0.86849 0.88401 0.85651 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.81 8.60 127.77 1.10 7.91 16 2 N -0.87 -43.36 3.31 -364.89 -1.21 -44.56 16 3 C -0.33 -17.59 9.17 84.03 0.77 -16.82 16 4 H 0.10 4.97 7.68 -2.91 -0.02 4.95 16 5 C -0.01 -0.50 5.12 84.86 0.43 -0.07 16 6 N -0.92 -50.44 10.65 21.65 0.23 -50.21 16 7 Si 0.98 41.59 29.57 68.60 2.03 43.62 16 8 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 S 2.68 121.39 5.60 -56.49 -0.32 121.07 16 12 O -1.00 -47.39 16.26 -128.00 -2.08 -49.47 16 13 O -0.99 -49.77 16.37 -128.00 -2.10 -51.87 16 14 C -0.67 -24.56 5.98 22.29 0.13 -24.42 16 15 C -0.03 -0.89 9.52 22.29 0.21 -0.68 16 16 C -0.11 -2.72 10.04 22.22 0.22 -2.50 16 17 C -0.09 -2.09 6.32 -19.72 -0.12 -2.22 16 18 C -0.17 -4.42 6.32 -19.72 -0.12 -4.54 16 19 C -0.01 -0.40 9.52 22.22 0.21 -0.19 16 20 C 0.09 1.89 7.63 71.36 0.54 2.44 16 21 O -0.37 -7.81 11.72 -148.98 -1.75 -9.55 16 22 C 0.09 1.50 7.63 71.36 0.54 2.04 16 23 H 0.04 1.93 7.35 -2.38 -0.02 1.92 16 24 H 0.05 2.58 7.31 -2.39 -0.02 2.57 16 25 H 0.05 2.08 7.61 -2.39 -0.02 2.06 16 26 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.14 4.59 7.62 -2.91 -0.02 4.56 16 28 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.14 4.32 7.63 -2.91 -0.02 4.30 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -68.96 294.78 -0.13 -69.09 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.13 Total: 10.92 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.92 Total: -39.04 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -0.98 Total: -94.77 kcal Atomic # 8 Polarization: -104.97 SS G_CDS: -5.92 Total: -110.89 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 121.39 SS G_CDS: -0.32 Total: 121.07 kcal Total: -68.96 -0.13 -69.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330844502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.922 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds