Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35780 * 116.99848 * 2 1 4 4 C 1.38026 * 123.47225 * 0.19533 * 3 2 1 5 5 C 1.33612 * 115.08436 * 180.27374 * 4 3 2 6 6 S 1.70580 * 111.14713 * 359.74790 * 5 4 3 7 7 C 1.37272 * 123.46993 * 179.97438 * 3 2 1 8 8 C 1.41723 * 125.47571 * 0.02562 * 7 3 2 9 9 O 1.21775 * 119.99805 * 359.71990 * 8 7 3 10 10 N 1.34774 * 119.99914 * 179.71518 * 8 7 3 11 11 C 1.47586 * 134.48934 * 179.97438 * 10 8 7 12 12 C 1.53949 * 86.11504 * 155.36070 * 11 10 8 13 13 O 1.42903 * 113.74102 * 269.15490 * 12 11 10 14 14 C 1.50694 * 113.74088 * 137.95266 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.92388 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.92552 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47807 * 134.45633 * 359.87090 * 10 8 7 23 23 H 1.08999 * 109.46370 * 60.00462 * 1 2 3 24 24 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47597 * 300.00365 * 1 2 3 26 26 H 1.07999 * 122.45975 * 0.02562 * 4 3 2 27 27 H 1.08001 * 124.42904 * 179.74508 * 5 4 3 28 28 H 1.08993 * 113.76952 * 41.05857 * 11 10 8 29 29 H 1.08993 * 113.76905 * 269.65828 * 11 10 8 30 30 H 0.96700 * 113.99800 * 178.07503 * 13 12 11 31 31 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 32 32 H 1.08995 * 113.77163 * 90.38050 * 22 10 8 33 33 H 1.09005 * 113.83876 * 318.91036 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1389 3.5001 -0.0025 6 16 3.7923 3.0805 -0.0071 7 6 3.4094 1.3645 0.0005 8 6 4.3568 0.3105 0.0006 9 8 3.9794 -0.8473 0.0053 10 7 5.6753 0.5895 -0.0047 11 6 6.9051 -0.2265 -0.0058 12 6 7.5879 0.9923 -0.6527 13 8 7.5545 0.9795 -2.0813 14 6 8.9591 1.2839 -0.0997 15 1 9.3844 0.6409 0.6566 16 6 9.6707 2.3718 -0.5594 17 7 9.1531 3.1546 -1.4807 18 14 11.3701 2.7337 0.1266 19 1 11.9197 3.9482 -0.5278 20 1 11.2748 2.9602 1.5911 21 1 12.2669 1.5803 -0.1386 22 6 6.4696 1.8359 -0.0136 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2866 2.4660 0.0077 27 1 1.7662 4.5138 -0.0046 28 1 6.8532 -1.0984 -0.6578 29 1 7.2777 -0.4609 0.9913 30 1 7.9564 1.7578 -2.4910 31 1 9.6536 3.9201 -1.8038 32 1 6.7142 2.2081 0.9812 33 1 6.0708 2.6078 -0.6718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331479055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -42.599975 kcal Electronic energy + Delta-G solvation = -20130.186112 eV Core-core repulsion = 16864.039649 eV Total energy + Delta-G solvation = -3266.146463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.01196 -39.14647 -37.09878 -35.75675 -33.87977 -32.20290 -30.39953 -28.51197 -26.87730 -25.38862 -25.28911 -24.12783 -20.89996 -19.51287 -19.10469 -17.68173 -17.05255 -16.61219 -15.89852 -15.79438 -15.23088 -14.95223 -14.60235 -14.21953 -14.10732 -13.70684 -13.17946 -12.78218 -12.54692 -12.40171 -12.28261 -11.87423 -11.54552 -11.51998 -11.18911 -11.04441 -11.02991 -10.68065 -10.44725 -10.24572 -9.60871 -9.15716 -8.74447 -8.67638 -8.38207 -7.99299 -7.67230 -6.37390 -4.47679 0.70829 1.66327 2.01763 2.49403 3.17961 3.23613 3.26264 3.56725 3.67833 3.89042 4.20700 4.70305 4.86758 5.04748 5.07583 5.10863 5.36913 5.45562 5.58178 5.69219 5.84702 5.97604 6.16520 6.27944 6.41502 6.53165 6.65813 6.77335 7.12292 7.37831 7.64650 7.84243 8.54466 8.55648 8.88898 9.23360 9.45268 10.69299 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030606 B = 0.004903 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.644067 B = 5709.858225 C = 6289.687397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.273 6.273 3 C 0.171 3.829 4 C -0.215 4.215 5 C -0.228 4.228 6 S 0.263 5.737 7 C -0.305 4.305 8 C 0.605 3.395 9 O -0.547 6.547 10 N -0.636 5.636 11 C 0.116 3.884 12 C 0.243 3.757 13 O -0.571 6.571 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.071 3.929 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.143 0.857 27 H 0.168 0.832 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.391 0.609 31 H 0.273 0.727 32 H 0.085 0.915 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 3.744 3.101 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.185 6.185 3 C 0.111 3.889 4 C -0.249 4.249 5 C -0.366 4.366 6 S 0.530 5.470 7 C -0.425 4.425 8 C 0.396 3.604 9 O -0.428 6.428 10 N -0.370 5.370 11 C -0.006 4.006 12 C 0.201 3.799 13 O -0.383 6.383 14 C -0.576 4.576 15 H 0.090 0.910 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.052 4.052 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.186 0.814 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.246 0.754 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.086 3.339 3.073 12.910 hybrid contribution -0.711 0.424 0.276 0.873 sum -12.798 3.763 3.348 13.753 Atomic orbital electron populations 1.23116 0.79029 1.03995 1.00971 1.86343 1.20282 1.24291 1.87535 1.18228 0.90196 0.85297 0.95216 1.19923 1.01569 0.91015 1.12343 1.25345 1.01526 1.03428 1.06312 1.83788 1.00806 0.95593 1.66802 1.22884 0.95166 0.98632 1.25805 1.15196 0.80433 0.87364 0.77431 1.90800 1.79049 1.20329 1.52661 1.50112 1.03177 1.12253 1.71504 1.23403 0.80049 0.97099 1.00023 1.19813 0.91241 0.88581 0.80268 1.86079 1.83651 1.49584 1.18939 1.21476 1.01022 1.11741 1.23327 0.91028 1.25061 0.98623 0.94994 0.94262 1.69397 1.38623 1.16687 1.29073 0.86400 0.83076 0.77867 0.79244 1.21022 1.19891 1.19865 1.24461 0.91202 0.88340 1.01245 0.92846 0.88180 0.92894 0.83899 0.81401 0.91022 0.89606 0.75416 0.91632 0.89706 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.94 101.05 1.00 1.27 16 2 O -0.27 -4.69 9.36 -36.57 -0.34 -5.03 16 3 C 0.17 2.91 6.70 -40.01 -0.27 2.65 16 4 C -0.21 -2.79 9.17 -41.28 -0.38 -3.17 16 5 C -0.23 -2.78 10.90 29.11 0.32 -2.46 16 6 S 0.26 4.03 19.53 -107.50 -2.10 1.93 16 7 C -0.30 -5.89 6.27 -38.60 -0.24 -6.13 16 8 C 0.60 13.89 7.83 -14.93 -0.12 13.78 16 9 O -0.55 -14.05 16.57 -12.40 -0.21 -14.26 16 10 N -0.64 -14.37 3.61 -181.47 -0.66 -15.03 16 11 C 0.12 2.63 8.23 -2.96 -0.02 2.61 16 12 C 0.24 5.88 1.40 -90.83 -0.13 5.75 16 13 O -0.57 -14.81 13.49 -35.23 -0.48 -15.29 16 14 C -0.54 -13.43 8.61 -34.44 -0.30 -13.72 16 15 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.07 1.80 5.40 -17.82 -0.10 1.71 16 17 N -0.90 -22.39 11.20 55.43 0.62 -21.77 16 18 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.07 1.56 6.62 -2.83 -0.02 1.54 16 23 H 0.05 0.48 7.89 -51.93 -0.41 0.07 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 26 H 0.14 1.40 6.99 -52.49 -0.37 1.03 16 27 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 30 H 0.39 10.12 6.60 45.56 0.30 10.42 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.08 1.77 8.09 -51.93 -0.42 1.35 16 33 H 0.07 1.55 6.35 -51.93 -0.33 1.22 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -30.82 298.03 -6.80 -37.63 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.87 Total: 9.29 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.25 Total: 3.81 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.03 Total: -36.80 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.02 Total: -34.58 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.10 Total: 1.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.82 -6.80 -37.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331479055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.975 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds