Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35780 * 116.99848 * 2 1 4 4 C 1.38026 * 123.47225 * 0.19533 * 3 2 1 5 5 C 1.33612 * 115.08436 * 180.27374 * 4 3 2 6 6 S 1.70580 * 111.14713 * 359.74790 * 5 4 3 7 7 C 1.37272 * 123.46993 * 179.97438 * 3 2 1 8 8 C 1.41723 * 125.47571 * 0.02562 * 7 3 2 9 9 O 1.21775 * 119.99805 * 359.71990 * 8 7 3 10 10 N 1.34774 * 119.99914 * 179.71518 * 8 7 3 11 11 C 1.47586 * 134.48934 * 179.97438 * 10 8 7 12 12 C 1.53949 * 86.11504 * 155.36070 * 11 10 8 13 13 O 1.42903 * 113.74102 * 269.15490 * 12 11 10 14 14 C 1.50694 * 113.74088 * 137.95266 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.92388 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.92552 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47807 * 134.45633 * 359.87090 * 10 8 7 23 23 H 1.08999 * 109.46370 * 60.00462 * 1 2 3 24 24 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47597 * 300.00365 * 1 2 3 26 26 H 1.07999 * 122.45975 * 0.02562 * 4 3 2 27 27 H 1.08001 * 124.42904 * 179.74508 * 5 4 3 28 28 H 1.08993 * 113.76952 * 41.05857 * 11 10 8 29 29 H 1.08993 * 113.76905 * 269.65828 * 11 10 8 30 30 H 0.96700 * 113.99800 * 178.07503 * 13 12 11 31 31 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 32 32 H 1.08995 * 113.77163 * 90.38050 * 22 10 8 33 33 H 1.09005 * 113.83876 * 318.91036 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1389 3.5001 -0.0025 6 16 3.7923 3.0805 -0.0071 7 6 3.4094 1.3645 0.0005 8 6 4.3568 0.3105 0.0006 9 8 3.9794 -0.8473 0.0053 10 7 5.6753 0.5895 -0.0047 11 6 6.9051 -0.2265 -0.0058 12 6 7.5879 0.9923 -0.6527 13 8 7.5545 0.9795 -2.0813 14 6 8.9591 1.2839 -0.0997 15 1 9.3844 0.6409 0.6566 16 6 9.6707 2.3718 -0.5594 17 7 9.1531 3.1546 -1.4807 18 14 11.3701 2.7337 0.1266 19 1 11.9197 3.9482 -0.5278 20 1 11.2748 2.9602 1.5911 21 1 12.2669 1.5803 -0.1386 22 6 6.4696 1.8359 -0.0136 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2866 2.4660 0.0077 27 1 1.7662 4.5138 -0.0046 28 1 6.8532 -1.0984 -0.6578 29 1 7.2777 -0.4609 0.9913 30 1 7.9564 1.7578 -2.4910 31 1 9.6536 3.9201 -1.8038 32 1 6.7142 2.2081 0.9812 33 1 6.0708 2.6078 -0.6718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331479055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = -65.057852 kcal Electronic energy + Delta-G solvation = -20131.159959 eV Core-core repulsion = 16864.039649 eV Total energy + Delta-G solvation = -3267.120310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44318 -40.68483 -38.84004 -36.91497 -35.79767 -34.13869 -31.81497 -30.03904 -28.07712 -27.08863 -26.93887 -25.40435 -22.46073 -20.93659 -20.50214 -19.48155 -18.70726 -18.01595 -17.35028 -17.05198 -16.96760 -16.31398 -16.21251 -15.89370 -15.46220 -14.88035 -14.75875 -14.42361 -14.12426 -13.88516 -13.56104 -13.44064 -13.38664 -12.95238 -12.74260 -12.47777 -12.26475 -12.21649 -12.02218 -11.75478 -11.42609 -10.97005 -10.62640 -10.25018 -9.94830 -9.54879 -9.05880 -8.24140 -6.41545 -0.49506 0.46339 0.92241 1.33933 1.50668 1.52715 1.59943 1.97799 2.26383 2.43703 2.52220 2.98139 3.54942 3.74239 3.96411 4.14085 4.17589 4.30875 4.38122 4.49119 4.58524 4.62158 4.68219 4.76515 4.84778 4.85660 4.94431 5.17394 5.26436 5.74204 5.93828 6.29347 6.63654 6.81897 7.16432 7.31712 7.45416 8.82212 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030606 B = 0.004903 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.644067 B = 5709.858225 C = 6289.687397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.311 6.311 3 C 0.183 3.817 4 C -0.219 4.219 5 C -0.186 4.186 6 S 0.250 5.750 7 C -0.372 4.372 8 C 0.598 3.402 9 O -0.593 6.593 10 N -0.641 5.641 11 C 0.113 3.887 12 C 0.226 3.774 13 O -0.586 6.586 14 C -0.559 4.559 15 H 0.072 0.928 16 C 0.037 3.963 17 N -0.914 5.914 18 Si 0.969 3.031 19 H -0.281 1.281 20 H -0.267 1.267 21 H -0.276 1.276 22 C 0.089 3.911 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.185 0.815 27 H 0.216 0.784 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.388 0.612 31 H 0.277 0.723 32 H 0.093 0.907 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 5.935 3.780 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C 0.121 3.879 4 C -0.251 4.251 5 C -0.324 4.324 6 S 0.516 5.484 7 C -0.491 4.491 8 C 0.392 3.608 9 O -0.478 6.478 10 N -0.375 5.375 11 C -0.009 4.009 12 C 0.184 3.816 13 O -0.398 6.398 14 C -0.597 4.597 15 H 0.090 0.910 16 C -0.164 4.164 17 N -0.554 5.554 18 Si 0.794 3.206 19 H -0.206 1.206 20 H -0.192 1.192 21 H -0.202 1.202 22 C -0.034 4.034 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.095 0.905 26 H 0.202 0.798 27 H 0.233 0.767 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.242 0.758 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.717 5.534 3.756 15.261 hybrid contribution -0.385 -0.257 0.036 0.464 sum -14.102 5.277 3.792 15.527 Atomic orbital electron populations 1.23510 0.75787 1.05709 1.03088 1.86295 1.23815 1.25279 1.86963 1.18710 0.89870 0.86666 0.92698 1.20211 1.03511 0.89220 1.12157 1.25836 0.99024 1.05383 1.02149 1.83672 1.03753 0.93171 1.67808 1.22750 0.95615 0.99755 1.30995 1.15755 0.80745 0.87934 0.76318 1.90739 1.79672 1.22317 1.55042 1.50149 1.03306 1.12244 1.71783 1.23443 0.80636 0.96344 1.00524 1.20059 0.92083 0.89990 0.79442 1.86065 1.83746 1.49619 1.20331 1.21670 1.01740 1.12385 1.23927 0.90958 1.25725 1.01655 0.94641 0.94418 1.69458 1.39671 1.16817 1.29436 0.85443 0.78899 0.77447 0.78844 1.20586 1.19201 1.20180 1.24244 0.89834 0.87972 1.01356 0.90757 0.86962 0.90526 0.79799 0.76734 0.92406 0.87941 0.75772 0.91316 0.88864 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.94 113.37 1.13 1.38 16 2 O -0.31 -10.50 9.36 -74.33 -0.70 -11.20 16 3 C 0.18 6.00 6.70 21.99 0.15 6.15 16 4 C -0.22 -4.82 9.17 21.17 0.19 -4.63 16 5 C -0.19 -3.73 10.90 66.77 0.73 -3.00 16 6 S 0.25 7.31 19.53 -56.49 -1.10 6.21 16 7 C -0.37 -14.46 6.27 22.90 0.14 -14.31 16 8 C 0.60 28.57 7.83 85.10 0.67 29.24 16 9 O -0.59 -31.99 16.57 12.17 0.20 -31.79 16 10 N -0.64 -29.99 3.61 -850.06 -3.07 -33.06 16 11 C 0.11 5.31 8.23 86.49 0.71 6.02 16 12 C 0.23 11.19 1.40 -10.87 -0.02 11.17 16 13 O -0.59 -31.38 13.49 -148.98 -2.01 -33.39 16 14 C -0.56 -28.18 8.61 25.60 0.22 -27.96 16 15 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 16 C 0.04 1.80 5.40 84.66 0.46 2.25 16 17 N -0.91 -45.48 11.20 21.45 0.24 -45.24 16 18 Si 0.97 39.02 29.54 68.60 2.03 41.05 16 19 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 22 C 0.09 3.96 6.62 86.45 0.57 4.53 16 23 H 0.07 1.08 7.89 -2.39 -0.02 1.06 16 24 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 26 H 0.18 2.51 6.99 -2.91 -0.02 2.49 16 27 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.10 4.37 8.09 -2.39 -0.02 4.35 16 30 H 0.39 20.65 6.60 -74.06 -0.49 20.16 16 31 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 32 H 0.09 3.92 8.09 -2.39 -0.02 3.90 16 33 H 0.07 3.25 6.35 -2.38 -0.02 3.23 16 Total: -1.00 -69.50 298.03 1.21 -68.29 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.66 Total: 28.29 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.95 Total: 10.85 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.83 Total: -78.30 kcal Atomic # 8 Polarization: -73.87 SS G_CDS: -2.50 Total: -76.38 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 7.31 SS G_CDS: -1.10 Total: 6.21 kcal Total: -69.50 1.21 -68.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331479055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.233 kcal (2) G-P(sol) polarization free energy of solvation -69.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds