Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36210 * 117.00254 * 2 1 4 4 C 1.34090 * 122.49933 * 0.02562 * 3 2 1 5 5 S 1.70594 * 110.97424 * 179.72889 * 4 3 2 6 6 C 1.75817 * 91.62374 * 0.32840 * 5 4 3 7 7 C 1.46546 * 125.42583 * 179.97438 * 6 5 4 8 8 O 1.21707 * 119.99506 * 179.69469 * 7 6 5 9 9 N 1.34774 * 120.00101 * 359.68903 * 7 6 5 10 10 C 1.47586 * 134.48934 * 180.02562 * 9 7 6 11 11 C 1.53949 * 86.11504 * 155.36070 * 10 9 7 12 12 O 1.42903 * 113.74102 * 269.15490 * 11 10 9 13 13 C 1.50694 * 113.74088 * 137.95266 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.92388 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.92552 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47807 * 134.45633 * 359.87242 * 9 7 6 22 22 C 1.36736 * 109.14181 * 359.67791 * 6 5 4 23 23 H 1.09007 * 109.47250 * 300.00199 * 1 2 3 24 24 H 1.09001 * 109.47276 * 59.99988 * 1 2 3 25 25 H 1.08996 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.08003 * 124.51111 * 0.02562 * 4 3 2 27 27 H 1.08993 * 113.76952 * 41.05857 * 10 9 7 28 28 H 1.08995 * 113.86700 * 269.67206 * 10 9 7 29 29 H 0.96700 * 113.99800 * 178.07503 * 12 11 10 30 30 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 31 31 H 1.08995 * 113.77163 * 90.38050 * 21 9 7 32 32 H 1.09005 * 113.83876 * 318.91036 * 21 9 7 33 33 H 1.08007 * 123.36925 * 180.24434 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3690 0.0005 5 16 2.4295 3.7036 0.0079 6 6 3.8354 2.6479 0.0002 7 6 5.2317 3.0927 0.0013 8 8 6.1314 2.2731 0.0012 9 7 5.5195 4.4094 0.0023 10 6 6.7690 5.1949 0.0031 11 6 5.9376 6.3218 -0.6365 12 8 5.9330 6.2934 -2.0653 13 6 6.2365 7.6887 -0.0770 14 1 6.9988 7.8081 0.6786 15 6 5.5366 8.7871 -0.5298 16 7 4.6086 8.6418 -1.4503 17 14 5.9067 10.4814 0.1643 18 1 5.0244 11.4851 -0.4835 19 1 5.6636 10.4801 1.6292 20 1 7.3264 10.8260 -0.1016 21 6 4.7099 5.6460 0.0003 22 6 3.4183 1.3457 -0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2895 2.4446 0.0013 27 1 7.5413 4.7925 -0.6523 28 1 7.1391 5.4337 1.0001 29 1 5.3882 6.9819 -2.4706 30 1 4.1161 9.4144 -1.7686 31 1 4.4720 6.0170 0.9972 32 1 3.8417 5.6030 -0.6574 33 1 4.0961 0.5048 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331565212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -46.729836 kcal Electronic energy + Delta-G solvation = -19782.675699 eV Core-core repulsion = 16516.350151 eV Total energy + Delta-G solvation = -3266.325548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89184 -39.43642 -37.47719 -35.57675 -34.00401 -32.26696 -29.92626 -28.39011 -27.87044 -25.63968 -25.40261 -23.63012 -20.96089 -19.54310 -18.83075 -17.84687 -17.17765 -17.05155 -15.91632 -15.86705 -15.54592 -15.02850 -14.78242 -14.40800 -14.19328 -13.35390 -12.99781 -12.88887 -12.74760 -12.58063 -12.41869 -12.02646 -11.73309 -11.61332 -11.27773 -11.07856 -10.98091 -10.71472 -10.51093 -10.32764 -9.81070 -9.33486 -8.82485 -8.80088 -8.48461 -7.96093 -7.91134 -6.43437 -4.54084 0.64763 1.63038 2.08259 2.53322 3.13452 3.14475 3.20545 3.23383 3.55433 3.62013 4.15783 4.77261 4.86277 4.90497 5.00647 5.05046 5.28670 5.32540 5.51330 5.77679 5.86812 5.98325 6.07397 6.16983 6.29723 6.41349 6.53740 6.60412 7.02599 7.19836 7.58745 7.76178 8.31397 8.49256 8.60570 9.17143 9.37455 10.63430 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.004526 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.086925 B = 6185.304702 C = 6825.164505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C 0.100 3.900 4 C -0.365 4.365 5 S 0.258 5.742 6 C -0.220 4.220 7 C 0.600 3.400 8 O -0.550 6.550 9 N -0.628 5.628 10 C 0.116 3.884 11 C 0.243 3.757 12 O -0.571 6.571 13 C -0.539 4.539 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.273 1.273 20 H -0.273 1.273 21 C 0.069 3.931 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.166 0.834 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.392 0.608 30 H 0.274 0.726 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -7.932 3.087 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C 0.043 3.957 4 C -0.502 4.502 5 S 0.526 5.474 6 C -0.341 4.341 7 C 0.388 3.612 8 O -0.431 6.431 9 N -0.361 5.361 10 C -0.005 4.005 11 C 0.201 3.799 12 O -0.383 6.383 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.129 4.129 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.054 4.054 22 C -0.119 4.119 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.184 0.816 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.247 0.753 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.917 -7.564 3.069 12.089 hybrid contribution -0.737 -0.153 0.262 0.797 sum -9.654 -7.717 3.331 12.800 Atomic orbital electron populations 1.22990 0.78618 1.03610 1.01198 1.86083 1.20953 1.25570 1.89725 1.17506 0.91485 0.84517 1.02171 1.25352 1.06045 0.98854 1.19972 1.83599 0.92055 1.04801 1.66973 1.24547 0.98169 0.97203 1.14148 1.16476 0.85957 0.81420 0.77328 1.90773 1.46968 1.52457 1.52922 1.50123 1.12768 1.03138 1.70053 1.23500 0.88386 0.88237 1.00414 1.19796 0.88156 0.91534 0.80383 1.86076 1.73897 1.59378 1.18910 1.21450 1.21630 0.91145 1.23505 0.90942 1.25066 0.93704 0.99923 0.94224 1.69389 1.23216 1.31951 1.29117 0.86383 0.78634 0.82212 0.79279 1.20990 1.19858 1.19827 1.24564 0.98914 0.80332 1.01616 1.19839 0.92693 0.96784 1.02559 0.92927 0.92874 0.88394 0.81631 0.90722 0.89198 0.75278 0.91546 0.89344 0.90760 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.93 101.05 1.00 1.27 16 2 O -0.31 -4.10 10.56 -20.41 -0.22 -4.31 16 3 C 0.10 1.47 6.61 -41.23 -0.27 1.20 16 4 C -0.36 -4.88 9.81 29.27 0.29 -4.60 16 5 S 0.26 3.93 19.74 -107.50 -2.12 1.81 16 6 C -0.22 -3.98 6.44 -36.78 -0.24 -4.21 16 7 C 0.60 12.77 8.01 -12.91 -0.10 12.67 16 8 O -0.55 -13.03 17.57 5.18 0.09 -12.94 16 9 N -0.63 -13.33 3.61 -179.71 -0.65 -13.98 16 10 C 0.12 2.48 8.23 -2.96 -0.02 2.46 16 11 C 0.24 5.66 1.40 -90.85 -0.13 5.53 16 12 O -0.57 -14.30 13.48 -35.23 -0.48 -14.77 16 13 C -0.54 -13.06 8.61 -34.44 -0.30 -13.36 16 14 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 16 N -0.90 -21.89 11.20 55.43 0.62 -21.27 16 17 Si 0.91 18.87 29.54 -169.99 -5.02 13.84 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C 0.07 1.44 6.70 -2.85 -0.02 1.42 16 22 C -0.08 -1.39 10.00 -40.31 -0.40 -1.79 16 23 H 0.05 0.40 7.84 -51.92 -0.41 0.00 16 24 H 0.05 0.42 7.84 -51.93 -0.41 0.01 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.17 1.75 6.96 -52.48 -0.37 1.38 16 27 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 29 H 0.39 9.86 6.60 45.56 0.30 10.16 16 30 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 32 H 0.07 1.53 6.44 -51.93 -0.33 1.20 16 33 H 0.16 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -28.21 300.50 -6.40 -34.60 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.87 Total: 10.22 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.29 Total: 2.27 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.03 Total: -35.25 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.60 Total: -32.02 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.12 Total: 1.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.21 -6.40 -34.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331565212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds