Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36210 * 117.00254 * 2 1 4 4 C 1.34090 * 122.49933 * 0.02562 * 3 2 1 5 5 S 1.70594 * 110.97424 * 179.72889 * 4 3 2 6 6 C 1.75817 * 91.62374 * 0.32840 * 5 4 3 7 7 C 1.46546 * 125.42583 * 179.97438 * 6 5 4 8 8 O 1.21707 * 119.99506 * 179.69469 * 7 6 5 9 9 N 1.34774 * 120.00101 * 359.68903 * 7 6 5 10 10 C 1.47586 * 134.48934 * 180.02562 * 9 7 6 11 11 C 1.53949 * 86.11504 * 155.36070 * 10 9 7 12 12 O 1.42903 * 113.74102 * 269.15490 * 11 10 9 13 13 C 1.50694 * 113.74088 * 137.95266 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.92388 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.92552 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47807 * 134.45633 * 359.87242 * 9 7 6 22 22 C 1.36736 * 109.14181 * 359.67791 * 6 5 4 23 23 H 1.09007 * 109.47250 * 300.00199 * 1 2 3 24 24 H 1.09001 * 109.47276 * 59.99988 * 1 2 3 25 25 H 1.08996 * 109.47222 * 180.02562 * 1 2 3 26 26 H 1.08003 * 124.51111 * 0.02562 * 4 3 2 27 27 H 1.08993 * 113.76952 * 41.05857 * 10 9 7 28 28 H 1.08995 * 113.86700 * 269.67206 * 10 9 7 29 29 H 0.96700 * 113.99800 * 178.07503 * 12 11 10 30 30 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 31 31 H 1.08995 * 113.77163 * 90.38050 * 21 9 7 32 32 H 1.09005 * 113.83876 * 318.91036 * 21 9 7 33 33 H 1.08007 * 123.36925 * 180.24434 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3690 0.0005 5 16 2.4295 3.7036 0.0079 6 6 3.8354 2.6479 0.0002 7 6 5.2317 3.0927 0.0013 8 8 6.1314 2.2731 0.0012 9 7 5.5195 4.4094 0.0023 10 6 6.7690 5.1949 0.0031 11 6 5.9376 6.3218 -0.6365 12 8 5.9330 6.2934 -2.0653 13 6 6.2365 7.6887 -0.0770 14 1 6.9988 7.8081 0.6786 15 6 5.5366 8.7871 -0.5298 16 7 4.6086 8.6418 -1.4503 17 14 5.9067 10.4814 0.1643 18 1 5.0244 11.4851 -0.4835 19 1 5.6636 10.4801 1.6292 20 1 7.3264 10.8260 -0.1016 21 6 4.7099 5.6460 0.0003 22 6 3.4183 1.3457 -0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2895 2.4446 0.0013 27 1 7.5413 4.7925 -0.6523 28 1 7.1391 5.4337 1.0001 29 1 5.3882 6.9819 -2.4706 30 1 4.1161 9.4144 -1.7686 31 1 4.4720 6.0170 0.9972 32 1 3.8417 5.6030 -0.6574 33 1 4.0961 0.5048 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331565212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -66.919783 kcal Electronic energy + Delta-G solvation = -19783.551200 eV Core-core repulsion = 16516.350151 eV Total energy + Delta-G solvation = -3267.201049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32353 -40.74982 -39.13086 -36.77160 -35.84302 -34.13729 -31.41213 -29.83493 -28.73666 -27.29890 -27.11487 -24.92486 -22.39215 -21.08231 -20.16484 -19.54555 -18.83514 -18.11183 -17.47964 -17.13821 -16.84185 -16.64290 -16.38181 -15.92930 -15.46541 -15.03051 -14.51514 -14.28723 -14.07048 -13.94548 -13.70491 -13.60863 -13.40222 -12.94392 -12.74517 -12.58071 -12.27111 -12.21454 -11.94021 -11.85478 -11.53127 -11.08805 -10.63952 -10.30851 -10.07279 -9.61599 -9.07851 -8.24806 -6.41777 -0.63721 0.39215 0.89740 1.29729 1.51044 1.53460 1.60050 1.72924 2.06084 2.41564 2.44738 2.97699 3.40548 3.74930 3.90574 4.10397 4.11563 4.39555 4.40064 4.41605 4.51609 4.56941 4.72172 4.74760 4.79413 4.83860 4.90110 5.05283 5.22105 5.74399 5.92742 6.24297 6.63807 6.65951 6.95148 7.31345 7.44844 8.81452 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028708 B = 0.004526 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.086925 B = 6185.304702 C = 6825.164505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.324 6.324 3 C 0.091 3.909 4 C -0.337 4.337 5 S 0.274 5.726 6 C -0.261 4.261 7 C 0.595 3.405 8 O -0.586 6.586 9 N -0.631 5.631 10 C 0.114 3.886 11 C 0.224 3.776 12 O -0.585 6.585 13 C -0.558 4.558 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.914 5.914 17 Si 0.967 3.033 18 H -0.283 1.283 19 H -0.267 1.267 20 H -0.277 1.277 21 C 0.084 3.916 22 C -0.078 4.078 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.202 0.798 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.389 0.611 30 H 0.277 0.723 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 -7.735 3.808 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.034 3.966 4 C -0.474 4.474 5 S 0.542 5.458 6 C -0.381 4.381 7 C 0.386 3.614 8 O -0.470 6.470 9 N -0.363 5.363 10 C -0.007 4.007 11 C 0.183 3.817 12 O -0.397 6.397 13 C -0.596 4.596 14 H 0.092 0.908 15 C -0.164 4.164 16 N -0.553 5.553 17 Si 0.792 3.208 18 H -0.208 1.208 19 H -0.192 1.192 20 H -0.202 1.202 21 C -0.039 4.039 22 C -0.115 4.115 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.219 0.781 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.243 0.757 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.047 -7.363 3.796 13.808 hybrid contribution -0.177 -0.299 0.010 0.348 sum -11.225 -7.662 3.806 14.113 Atomic orbital electron populations 1.23362 0.76074 1.05720 1.02318 1.86083 1.23530 1.24674 1.89647 1.17384 0.90818 0.85664 1.02692 1.25674 1.07406 0.97391 1.16969 1.83470 0.90977 1.04885 1.66514 1.24250 0.97495 0.98555 1.17822 1.16910 0.87182 0.80919 0.76367 1.90732 1.48505 1.53114 1.54651 1.50132 1.12611 1.03406 1.70156 1.23551 0.88324 0.87747 1.01097 1.20052 0.90026 0.92048 0.79565 1.86065 1.74043 1.59287 1.20294 1.21669 1.22080 0.91903 1.23956 0.90755 1.25702 0.93501 1.02747 0.94444 1.69450 1.23562 1.32754 1.29575 0.85466 0.78012 0.78446 0.78862 1.20812 1.19199 1.20195 1.24385 0.98050 0.79584 1.01883 1.19970 0.94018 0.96170 1.01296 0.91599 0.91777 0.86060 0.78128 0.91747 0.87258 0.75704 0.91347 0.88237 0.90598 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.93 113.37 1.13 1.39 16 2 O -0.32 -7.83 10.56 -95.94 -1.01 -8.84 16 3 C 0.09 2.48 6.61 21.20 0.14 2.62 16 4 C -0.34 -7.97 9.81 66.87 0.66 -7.31 16 5 S 0.27 7.87 19.74 -56.49 -1.12 6.75 16 6 C -0.26 -9.39 6.44 24.09 0.16 -9.24 16 7 C 0.60 25.82 8.01 86.41 0.69 26.51 16 8 O -0.59 -28.61 17.57 -4.37 -0.08 -28.69 16 9 N -0.63 -27.02 3.61 -844.51 -3.05 -30.07 16 10 C 0.11 4.95 8.23 86.49 0.71 5.66 16 11 C 0.22 10.49 1.40 -10.88 -0.02 10.47 16 12 O -0.59 -29.78 13.48 -148.98 -2.01 -31.79 16 13 C -0.56 -26.85 8.61 25.60 0.22 -26.63 16 14 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 15 C 0.04 1.76 5.40 84.66 0.46 2.22 16 16 N -0.91 -44.12 11.20 21.45 0.24 -43.88 16 17 Si 0.97 37.93 29.54 68.60 2.03 39.96 16 18 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 21 C 0.08 3.47 6.70 86.44 0.58 4.05 16 22 C -0.08 -2.56 10.00 21.80 0.22 -2.35 16 23 H 0.07 0.75 7.84 -2.38 -0.02 0.73 16 24 H 0.06 0.76 7.84 -2.39 -0.02 0.74 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.20 3.27 6.96 -2.91 -0.02 3.25 16 27 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.11 4.22 8.09 -2.39 -0.02 4.20 16 29 H 0.39 19.84 6.60 -74.06 -0.49 19.36 16 30 H 0.28 12.70 8.31 -92.71 -0.77 11.92 16 31 H 0.10 3.87 8.09 -2.39 -0.02 3.85 16 32 H 0.08 3.10 6.44 -2.38 -0.02 3.08 16 33 H 0.15 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -60.18 300.50 0.61 -59.57 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.67 Total: 29.57 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.94 Total: 7.41 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -2.81 Total: -73.95 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -3.10 Total: -69.32 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 7.87 SS G_CDS: -1.12 Total: 6.75 kcal Total: -60.18 0.61 -59.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331565212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds