Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36873 * 120.00150 * 2 1 4 4 H 1.07993 * 120.00320 * 192.96904 * 3 2 1 5 5 C 1.39054 * 119.99638 * 12.96357 * 3 2 1 6 6 N 1.31359 * 119.99940 * 29.14439 * 5 3 2 7 7 Si 1.86798 * 119.99966 * 209.13597 * 5 3 2 8 8 H 1.48496 * 109.47057 * 95.00340 * 7 5 3 9 9 H 1.48508 * 109.47064 * 214.99901 * 7 5 3 10 10 H 1.48502 * 109.47137 * 334.99898 * 7 5 3 11 11 C 1.34775 * 120.00061 * 180.02562 * 2 1 3 12 12 O 1.21595 * 120.00158 * 185.07106 * 11 2 1 13 13 C 1.47722 * 119.99918 * 5.07302 * 11 2 1 14 14 C 1.39662 * 120.15263 * 303.74152 * 13 11 2 15 15 C 1.37915 * 119.84846 * 180.02562 * 14 13 11 16 16 C 1.38397 * 120.15104 * 359.74301 * 15 14 13 17 17 C 1.38352 * 120.30565 * 0.51408 * 16 15 14 18 18 C 1.37961 * 120.14801 * 359.48938 * 17 16 15 19 19 S 1.76204 * 120.07450 * 180.27614 * 18 17 16 20 20 C 1.81405 * 104.45014 * 114.99782 * 19 18 17 21 21 O 1.42093 * 104.27771 * 231.06819 * 19 18 17 22 22 O 1.42101 * 104.27719 * 358.93030 * 19 18 17 23 23 H 1.09006 * 109.46700 * 267.80398 * 1 2 3 24 24 H 1.09001 * 109.47296 * 27.79974 * 1 2 3 25 25 H 1.08996 * 109.47558 * 147.80877 * 1 2 3 26 26 H 0.97001 * 120.00323 * 180.02562 * 6 5 3 27 27 H 1.08007 * 120.07206 * 359.97438 * 14 13 11 28 28 H 1.07999 * 119.92342 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.84366 * 180.25621 * 16 15 14 30 30 H 1.08001 * 119.92706 * 179.76708 * 17 16 15 31 31 H 1.09003 * 109.47143 * 59.99884 * 20 19 18 32 32 H 1.08994 * 109.47459 * 179.97438 * 20 19 18 33 33 H 1.09005 * 109.47221 * 300.00314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2086 1.1973 -0.2099 5 6 1.4806 2.3742 0.2702 6 7 0.4229 2.3704 1.0491 7 14 2.0866 3.9766 -0.4744 8 1 1.3392 4.2541 -1.7273 9 1 1.8660 5.0849 0.4892 10 1 3.5361 3.8650 -0.7771 11 6 2.1389 -1.1672 -0.0005 12 8 3.3513 -1.1693 0.0926 13 6 1.4046 -2.4439 -0.1142 14 6 0.3992 -2.7590 0.8025 15 6 -0.2820 -3.9530 0.6908 16 6 0.0251 -4.8357 -0.3300 17 6 1.0235 -4.5323 -1.2385 18 6 1.7129 -3.3415 -1.1384 19 16 2.9791 -2.9538 -2.3008 20 6 2.3471 -1.5060 -3.1926 21 8 4.0951 -2.5965 -1.4972 22 8 3.0262 -4.0860 -3.1583 23 1 -0.3633 -0.0394 1.0270 24 1 -0.3634 0.9091 -0.4793 25 1 -0.3634 -0.8696 -0.5474 26 1 -0.0438 3.1997 1.2373 27 1 0.1563 -2.0696 1.5977 28 1 -1.0594 -4.1981 1.3993 29 1 -0.5143 -5.7674 -0.4152 30 1 1.2607 -5.2272 -2.0304 31 1 2.1776 -0.6912 -2.4886 32 1 3.0755 -1.1936 -3.9408 33 1 1.4085 -1.7629 -3.6837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354131599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -47.972404 kcal Electronic energy + Delta-G solvation = -20983.730242 eV Core-core repulsion = 17717.350812 eV Total energy + Delta-G solvation = -3266.379429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61801 -37.71693 -36.50139 -35.37548 -34.79217 -32.06789 -31.12153 -30.71306 -29.09429 -26.48767 -25.12341 -23.06928 -22.77565 -19.81216 -18.47922 -17.43509 -16.97464 -16.35749 -15.89514 -15.56509 -15.17006 -14.73477 -14.51968 -14.27159 -13.95141 -13.65115 -13.03368 -12.83480 -12.68513 -12.58380 -12.08745 -11.78664 -11.69449 -11.62226 -11.53211 -11.40758 -11.14645 -10.98872 -10.54911 -10.45520 -10.40215 -10.21694 -9.17439 -9.11864 -8.76683 -8.39035 -7.93394 -6.61942 -3.94446 0.49042 1.02548 1.38951 3.02521 3.16998 3.22223 3.25066 3.49022 3.80381 3.97091 4.23775 4.56964 4.67207 4.87180 4.97002 5.09846 5.13597 5.20821 5.38640 5.51545 5.68554 5.85021 6.03473 6.06710 6.15412 6.26510 6.41117 6.48794 6.59134 6.91235 6.99039 7.39953 7.88008 8.28130 8.98696 9.19296 9.77652 10.43610 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.007211 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.360932 B = 3882.051908 C = 4750.845250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.425 5.425 3 C -0.320 4.320 4 H 0.112 0.888 5 C 0.039 3.961 6 N -0.853 5.853 7 Si 0.916 3.084 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.264 1.264 11 C 0.418 3.582 12 O -0.526 6.526 13 C 0.010 3.990 14 C -0.118 4.118 15 C -0.074 4.074 16 C -0.145 4.145 17 C -0.031 4.031 18 C -0.633 4.633 19 S 2.485 3.515 20 C -0.651 4.651 21 O -0.886 6.886 22 O -0.960 6.960 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.272 0.728 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -7.979 -5.381 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.143 5.143 3 C -0.447 4.447 4 H 0.130 0.870 5 C -0.167 4.167 6 N -0.489 5.489 7 Si 0.741 3.259 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.188 1.188 11 C 0.206 3.794 12 O -0.408 6.408 13 C 0.005 3.995 14 C -0.138 4.138 15 C -0.092 4.092 16 C -0.164 4.164 17 C -0.050 4.050 18 C -0.720 4.720 19 S 2.663 3.337 20 C -0.801 4.801 21 O -0.883 6.883 22 O -0.957 6.957 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.631 -8.235 -5.343 10.854 hybrid contribution -1.030 1.200 0.185 1.592 sum -5.661 -7.035 -5.159 10.400 Atomic orbital electron populations 1.21695 0.81247 1.00313 1.01401 1.43665 1.05459 1.04658 1.60553 1.19805 0.96213 0.81654 1.46993 0.87030 1.25284 0.96523 0.99793 0.95148 1.70133 1.20720 1.29122 1.28960 0.86073 0.79957 0.80722 0.79121 1.20166 1.20864 1.18846 1.18191 0.88343 0.83083 0.89831 1.90938 1.11456 1.85250 1.53135 1.20104 0.92355 0.94607 0.92395 1.21535 0.95354 0.97480 0.99414 1.21347 0.97854 0.93194 0.96770 1.21273 0.98875 1.00111 0.96144 1.20877 0.92391 0.93995 0.97730 1.30663 1.21490 1.03602 1.16265 1.05657 0.75996 0.76587 0.75451 1.30235 1.13053 1.21719 1.15133 1.93788 1.45977 1.83229 1.65326 1.93508 1.86541 1.47914 1.67745 0.92551 0.90545 0.94678 0.91806 0.84648 0.85350 0.85417 0.83950 0.84059 0.85267 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.01 7.62 59.85 0.46 2.47 16 2 N -0.42 -10.20 2.91 -123.32 -0.36 -10.56 16 3 C -0.32 -8.36 9.31 -15.00 -0.14 -8.50 16 4 H 0.11 3.09 7.42 -52.49 -0.39 2.70 16 5 C 0.04 0.97 4.70 -17.45 -0.08 0.89 16 6 N -0.85 -21.21 11.23 55.50 0.62 -20.59 16 7 Si 0.92 19.28 29.64 -169.99 -5.04 14.24 16 8 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 11 C 0.42 9.99 4.87 -12.39 -0.06 9.93 16 12 O -0.53 -14.59 13.36 -19.08 -0.25 -14.84 16 13 C 0.01 0.20 4.63 -104.97 -0.49 -0.29 16 14 C -0.12 -1.98 7.95 -39.17 -0.31 -2.30 16 15 C -0.07 -0.97 10.03 -39.64 -0.40 -1.37 16 16 C -0.14 -1.84 10.04 -39.48 -0.40 -2.24 16 17 C -0.03 -0.46 9.49 -39.64 -0.38 -0.84 16 18 C -0.63 -11.28 5.61 -39.16 -0.22 -11.50 16 19 S 2.48 44.28 5.26 -107.50 -0.57 43.71 16 20 C -0.65 -9.63 10.60 101.05 1.07 -8.56 16 21 O -0.89 -20.15 14.51 -67.21 -0.98 -21.12 16 22 O -0.96 -17.17 16.74 -57.54 -0.96 -18.13 16 23 H 0.06 1.18 7.41 -51.93 -0.38 0.79 16 24 H 0.08 1.64 6.60 -51.93 -0.34 1.30 16 25 H 0.03 0.61 6.28 -51.93 -0.33 0.29 16 26 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 27 H 0.14 2.23 7.13 -52.48 -0.37 1.86 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.14 1.84 7.21 -52.49 -0.38 1.47 16 31 H 0.14 2.47 6.58 -51.92 -0.34 2.13 16 32 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.12 1.44 8.14 -51.92 -0.42 1.02 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -33.47 289.18 -7.48 -40.95 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.36 Total: 4.30 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -0.94 Total: -22.31 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.27 Total: -31.15 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.19 Total: -54.10 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.04 Total: 14.24 kcal Atomic # 16 Polarization: 44.28 SS G_CDS: -0.57 Total: 43.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.47 -7.48 -40.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354131599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.020 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds