Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36873 * 120.00150 * 2 1 4 4 H 1.07993 * 120.00320 * 192.96904 * 3 2 1 5 5 C 1.39054 * 119.99638 * 12.96357 * 3 2 1 6 6 N 1.31359 * 119.99940 * 29.14439 * 5 3 2 7 7 Si 1.86798 * 119.99966 * 209.13597 * 5 3 2 8 8 H 1.48496 * 109.47057 * 95.00340 * 7 5 3 9 9 H 1.48508 * 109.47064 * 214.99901 * 7 5 3 10 10 H 1.48502 * 109.47137 * 334.99898 * 7 5 3 11 11 C 1.34775 * 120.00061 * 180.02562 * 2 1 3 12 12 O 1.21595 * 120.00158 * 185.07106 * 11 2 1 13 13 C 1.47722 * 119.99918 * 5.07302 * 11 2 1 14 14 C 1.39662 * 120.15263 * 303.74152 * 13 11 2 15 15 C 1.37915 * 119.84846 * 180.02562 * 14 13 11 16 16 C 1.38397 * 120.15104 * 359.74301 * 15 14 13 17 17 C 1.38352 * 120.30565 * 0.51408 * 16 15 14 18 18 C 1.37961 * 120.14801 * 359.48938 * 17 16 15 19 19 S 1.76204 * 120.07450 * 180.27614 * 18 17 16 20 20 C 1.81405 * 104.45014 * 114.99782 * 19 18 17 21 21 O 1.42093 * 104.27771 * 231.06819 * 19 18 17 22 22 O 1.42101 * 104.27719 * 358.93030 * 19 18 17 23 23 H 1.09006 * 109.46700 * 267.80398 * 1 2 3 24 24 H 1.09001 * 109.47296 * 27.79974 * 1 2 3 25 25 H 1.08996 * 109.47558 * 147.80877 * 1 2 3 26 26 H 0.97001 * 120.00323 * 180.02562 * 6 5 3 27 27 H 1.08007 * 120.07206 * 359.97438 * 14 13 11 28 28 H 1.07999 * 119.92342 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.84366 * 180.25621 * 16 15 14 30 30 H 1.08001 * 119.92706 * 179.76708 * 17 16 15 31 31 H 1.09003 * 109.47143 * 59.99884 * 20 19 18 32 32 H 1.08994 * 109.47459 * 179.97438 * 20 19 18 33 33 H 1.09005 * 109.47221 * 300.00314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2086 1.1973 -0.2099 5 6 1.4806 2.3742 0.2702 6 7 0.4229 2.3704 1.0491 7 14 2.0866 3.9766 -0.4744 8 1 1.3392 4.2541 -1.7273 9 1 1.8660 5.0849 0.4892 10 1 3.5361 3.8650 -0.7771 11 6 2.1389 -1.1672 -0.0005 12 8 3.3513 -1.1693 0.0926 13 6 1.4046 -2.4439 -0.1142 14 6 0.3992 -2.7590 0.8025 15 6 -0.2820 -3.9530 0.6908 16 6 0.0251 -4.8357 -0.3300 17 6 1.0235 -4.5323 -1.2385 18 6 1.7129 -3.3415 -1.1384 19 16 2.9791 -2.9538 -2.3008 20 6 2.3471 -1.5060 -3.1926 21 8 4.0951 -2.5965 -1.4972 22 8 3.0262 -4.0860 -3.1583 23 1 -0.3633 -0.0394 1.0270 24 1 -0.3634 0.9091 -0.4793 25 1 -0.3634 -0.8696 -0.5474 26 1 -0.0438 3.1997 1.2373 27 1 0.1563 -2.0696 1.5977 28 1 -1.0594 -4.1981 1.3993 29 1 -0.5143 -5.7674 -0.4152 30 1 1.2607 -5.2272 -2.0304 31 1 2.1776 -0.6912 -2.4886 32 1 3.0755 -1.1936 -3.9408 33 1 1.4085 -1.7629 -3.6837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354131599.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -71.867969 kcal Electronic energy + Delta-G solvation = -20984.766431 eV Core-core repulsion = 17717.350812 eV Total energy + Delta-G solvation = -3267.415619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13684 -39.20047 -37.97080 -36.88982 -36.65417 -33.88730 -32.35226 -32.08434 -30.33093 -28.25368 -26.84654 -24.50782 -24.00341 -21.38939 -19.86072 -19.06731 -18.63727 -17.89326 -17.29141 -16.98646 -16.84295 -16.17547 -15.93252 -15.85121 -15.45666 -15.11426 -14.47283 -14.12813 -14.01355 -13.88454 -13.59375 -13.45692 -13.32761 -13.22465 -13.02787 -12.83364 -12.62935 -12.45610 -12.32981 -12.15343 -11.93710 -11.55803 -10.99088 -10.41505 -10.33471 -9.87768 -9.81179 -8.50540 -5.92417 -0.83659 -0.24123 0.17283 1.33381 1.42711 1.54327 1.87117 1.93300 2.23829 2.47993 2.87491 2.89174 2.99686 3.36715 3.75029 3.87031 3.97724 4.06226 4.15708 4.36548 4.45347 4.52484 4.63744 4.85445 4.86115 4.91251 5.09895 5.21982 5.25744 5.34735 5.45269 5.85404 5.98325 6.39792 7.09590 7.34127 7.94860 8.54690 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.007211 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.360932 B = 3882.051908 C = 4750.845250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.435 5.435 3 C -0.358 4.358 4 H 0.080 0.920 5 C 0.013 3.987 6 N -0.869 5.869 7 Si 0.977 3.023 8 H -0.260 1.260 9 H -0.275 1.275 10 H -0.275 1.275 11 C 0.419 3.581 12 O -0.579 6.579 13 C -0.025 4.025 14 C -0.128 4.128 15 C -0.059 4.059 16 C -0.123 4.123 17 C -0.036 4.036 18 C -0.643 4.643 19 S 2.484 3.516 20 C -0.638 4.638 21 O -0.949 6.949 22 O -0.965 6.965 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.279 0.721 27 H 0.130 0.870 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.163 0.837 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -9.464 -6.225 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.153 5.153 3 C -0.485 4.485 4 H 0.098 0.902 5 C -0.193 4.193 6 N -0.505 5.505 7 Si 0.800 3.200 8 H -0.184 1.184 9 H -0.200 1.200 10 H -0.200 1.200 11 C 0.208 3.792 12 O -0.464 6.464 13 C -0.030 4.030 14 C -0.148 4.148 15 C -0.076 4.076 16 C -0.141 4.141 17 C -0.054 4.054 18 C -0.731 4.731 19 S 2.667 3.333 20 C -0.791 4.791 21 O -0.946 6.946 22 O -0.963 6.963 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.191 0.809 29 H 0.195 0.805 30 H 0.180 0.820 31 H 0.133 0.867 32 H 0.172 0.828 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.535 -9.739 -6.180 13.777 hybrid contribution -0.222 1.527 0.461 1.610 sum -7.757 -8.212 -5.719 12.662 Atomic orbital electron populations 1.21654 0.79361 1.01157 1.01307 1.43812 1.06640 1.04258 1.60580 1.19655 0.95582 0.83559 1.49725 0.90228 1.25954 0.96661 1.01980 0.94665 1.70158 1.21260 1.30257 1.28861 0.85179 0.78896 0.77012 0.78910 1.18441 1.20043 1.19971 1.18864 0.87990 0.84453 0.87924 1.90888 1.14024 1.86505 1.54988 1.19742 0.94651 0.93266 0.95319 1.21629 0.95157 0.99274 0.98707 1.21821 0.97431 0.91137 0.97226 1.21867 0.97119 1.01201 0.93936 1.21282 0.92439 0.92843 0.98873 1.30503 1.21819 1.04726 1.16061 1.05298 0.75621 0.77112 0.75261 1.30107 1.15623 1.18565 1.14768 1.93726 1.49403 1.84277 1.67218 1.93484 1.86814 1.48508 1.67466 0.93200 0.91654 0.91490 0.91087 0.85232 0.80918 0.80476 0.81968 0.86673 0.82790 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.50 7.62 127.77 0.97 5.47 16 2 N -0.43 -21.74 2.91 -662.33 -1.93 -23.66 16 3 C -0.36 -19.70 9.31 84.10 0.78 -18.92 16 4 H 0.08 4.78 7.42 -2.91 -0.02 4.76 16 5 C 0.01 0.65 4.70 84.96 0.40 1.05 16 6 N -0.87 -43.57 11.23 21.68 0.24 -43.33 16 7 Si 0.98 40.08 29.64 68.60 2.03 42.11 16 8 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 9 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 C 0.42 20.97 4.87 86.75 0.42 21.39 16 12 O -0.58 -34.46 13.36 19.27 0.26 -34.20 16 13 C -0.03 -1.01 4.63 -20.09 -0.09 -1.10 16 14 C -0.13 -4.08 7.95 22.54 0.18 -3.90 16 15 C -0.06 -1.28 10.03 22.23 0.22 -1.05 16 16 C -0.12 -2.44 10.04 22.33 0.22 -2.22 16 17 C -0.04 -0.93 9.49 22.23 0.21 -0.72 16 18 C -0.64 -22.34 5.61 22.54 0.13 -22.22 16 19 S 2.48 89.80 5.26 -56.49 -0.30 89.50 16 20 C -0.64 -18.59 10.60 113.37 1.20 -17.39 16 21 O -0.95 -45.93 14.51 -118.40 -1.72 -47.65 16 22 O -0.97 -33.84 16.74 -127.65 -2.14 -35.98 16 23 H 0.05 2.10 7.41 -2.38 -0.02 2.08 16 24 H 0.06 2.82 6.60 -2.39 -0.02 2.80 16 25 H 0.07 2.29 6.28 -2.39 -0.02 2.28 16 26 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 27 H 0.13 4.19 7.13 -2.91 -0.02 4.17 16 28 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.16 3.58 7.21 -2.91 -0.02 3.56 16 31 H 0.11 4.17 6.58 -2.39 -0.02 4.15 16 32 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 33 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -78.35 289.18 2.25 -76.11 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.14 Total: 16.70 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 4.65 Total: -39.60 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -1.68 Total: -66.99 kcal Atomic # 8 Polarization: -114.24 SS G_CDS: -3.60 Total: -117.83 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 89.80 SS G_CDS: -0.30 Total: 89.50 kcal Total: -78.35 2.25 -76.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354131599.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.240 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds