Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00498 * 2 1 4 4 H 1.07998 * 120.00075 * 202.32342 * 3 2 1 5 5 C 1.38813 * 119.99738 * 22.32010 * 3 2 1 6 6 N 1.31624 * 120.00002 * 11.15069 * 5 3 2 7 7 Si 1.86797 * 119.99778 * 191.14735 * 5 3 2 8 8 H 1.48493 * 109.47270 * 60.00428 * 7 5 3 9 9 H 1.48508 * 109.46853 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47206 * 299.99962 * 7 5 3 11 11 S 1.65602 * 119.99572 * 179.97438 * 2 1 3 12 12 O 1.42100 * 106.40145 * 156.46220 * 11 2 1 13 13 O 1.42095 * 106.40401 * 23.54452 * 11 2 1 14 14 C 1.76196 * 107.21922 * 269.99937 * 11 2 1 15 15 C 1.37981 * 119.87895 * 115.02610 * 14 11 2 16 16 C 1.38249 * 120.34710 * 180.02562 * 15 14 11 17 17 C 1.38388 * 119.76992 * 359.78483 * 16 15 14 18 18 C 1.37693 * 119.98093 * 0.03541 * 17 16 15 19 19 C 1.38924 * 120.78130 * 0.33073 * 18 17 16 20 20 O 1.36380 * 111.31724 * 179.08970 * 19 18 17 21 21 C 1.43767 * 109.10220 * 18.75444 * 20 19 18 22 22 C 1.51648 * 132.18756 * 180.35812 * 18 17 16 23 23 H 1.08996 * 109.46996 * 274.22585 * 1 2 3 24 24 H 1.09001 * 109.46811 * 34.22364 * 1 2 3 25 25 H 1.08997 * 109.47151 * 154.22186 * 1 2 3 26 26 H 0.97001 * 119.99915 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.82747 * 359.97438 * 15 14 11 28 28 H 1.08004 * 120.11186 * 179.83133 * 16 15 14 29 29 H 1.08007 * 120.00785 * 180.02562 * 17 16 15 30 30 H 1.08994 * 110.75146 * 214.07736 * 21 20 19 31 31 H 1.08998 * 110.74760 * 90.90831 * 21 20 19 32 32 H 1.08993 * 110.93838 * 46.43697 * 22 18 17 33 33 H 1.09004 * 110.96597 * 282.76744 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1691 1.2208 -0.3553 5 6 1.5338 2.3430 0.4566 6 7 0.3819 2.2696 1.0893 7 14 2.3396 4.0042 0.1730 8 1 2.4994 4.2344 -1.2852 9 1 1.4873 5.0732 0.7529 10 1 3.6728 4.0257 0.8267 11 16 2.2929 -1.4342 0.0006 12 8 3.5759 -1.1572 -0.5439 13 8 1.4113 -2.4067 -0.5434 14 6 2.5537 -1.8852 1.6838 15 6 1.9582 -3.0218 2.1911 16 6 2.1558 -3.3844 3.5105 17 6 2.9589 -2.6049 4.3244 18 6 3.5571 -1.4722 3.8193 19 6 3.3600 -1.0934 2.4973 20 8 4.0233 0.0627 2.2087 21 6 5.0434 0.2795 3.1984 22 6 4.4762 -0.4408 4.4446 23 1 -0.3633 0.0757 1.0248 24 1 -0.3633 0.8497 -0.5780 25 1 -0.3633 -0.9254 -0.4469 26 1 -0.0483 3.0782 1.4087 27 1 1.3338 -3.6310 1.5543 28 1 1.6857 -4.2735 3.9043 29 1 3.1162 -2.8848 5.3557 30 1 5.1725 1.3441 3.3931 31 1 5.9855 -0.1717 2.8871 32 1 5.2724 -0.9219 5.0125 33 1 3.9156 0.2513 5.0730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421230136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -61.794635 kcal Electronic energy + Delta-G solvation = -21227.230698 eV Core-core repulsion = 17960.251892 eV Total energy + Delta-G solvation = -3266.978806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59485 -36.96856 -35.66572 -35.56851 -34.32641 -32.35323 -31.38697 -29.69291 -28.83206 -26.36286 -23.46680 -23.23973 -22.09259 -21.43692 -18.36536 -17.37592 -16.94390 -16.63307 -16.04115 -15.87842 -15.51525 -14.53832 -14.52007 -14.22523 -13.35120 -13.06582 -12.95045 -12.78593 -12.66256 -12.28938 -11.78979 -11.68694 -11.47846 -11.30690 -11.08580 -10.97689 -10.93469 -10.63221 -10.61178 -10.52475 -10.14199 -10.05682 -9.59013 -9.18786 -8.71646 -8.02174 -7.75020 -6.46850 -3.91519 1.41427 1.75820 1.88950 3.17088 3.17785 3.23677 3.68633 3.90566 4.07760 4.55791 4.64263 4.84715 4.88643 5.13278 5.15122 5.25629 5.43368 5.53345 5.69744 5.73294 5.92114 5.97107 6.09900 6.33345 6.47278 6.58063 6.68074 6.75494 6.93533 6.99863 7.18236 7.35253 7.51432 7.58431 8.38350 8.74546 9.21742 10.49765 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.009495 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.473985 B = 2948.257532 C = 3827.815675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.805 5.805 3 C -0.226 4.226 4 H 0.116 0.884 5 C 0.031 3.969 6 N -0.841 5.841 7 Si 0.927 3.073 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.268 1.268 11 S 2.537 3.463 12 O -0.980 6.980 13 O -1.006 7.006 14 C -0.678 4.678 15 C -0.006 4.006 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.208 4.208 19 C 0.209 3.791 20 O -0.269 6.269 21 C 0.046 3.954 22 C -0.105 4.105 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.273 0.727 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -2.596 7.457 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.629 5.629 3 C -0.374 4.374 4 H 0.133 0.867 5 C -0.180 4.180 6 N -0.482 5.482 7 Si 0.752 3.248 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.193 1.193 11 S 2.634 3.366 12 O -0.969 6.969 13 O -0.996 6.996 14 C -0.756 4.756 15 C -0.025 4.025 16 C -0.200 4.200 17 C -0.061 4.061 18 C -0.209 4.209 19 C 0.161 3.839 20 O -0.180 6.180 21 C -0.030 4.030 22 C -0.142 4.142 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.782 -3.105 6.693 8.292 hybrid contribution 0.352 0.788 1.297 1.558 sum 4.134 -2.317 7.991 9.290 Atomic orbital electron populations 1.21301 0.79250 0.99864 1.01852 1.54089 1.13098 1.18717 1.77018 1.19954 1.00686 0.82914 1.33820 0.86690 1.25709 0.96494 1.00882 0.94958 1.70111 1.15506 1.30018 1.32524 0.85975 0.79254 0.80238 0.79298 1.19366 1.20769 1.19290 1.11266 0.73929 0.74425 0.76984 1.93362 1.41336 1.84492 1.77740 1.93307 1.65528 1.62002 1.78725 1.31342 1.09697 1.02759 1.31761 1.20697 0.93844 0.92896 0.95113 1.21041 1.02705 1.01542 0.94718 1.20291 0.94443 0.92415 0.98916 1.20820 1.05769 0.99371 0.94988 1.18900 0.89186 0.84226 0.91600 1.87217 1.45516 1.35404 1.49908 1.23845 0.91022 1.02090 0.86009 1.21740 0.98014 0.96207 0.98242 0.93046 0.90725 0.93833 0.91698 0.84319 0.85726 0.86287 0.87620 0.90672 0.89646 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.90 8.92 59.85 0.53 3.43 16 2 N -0.80 -20.40 3.31 -66.69 -0.22 -20.62 16 3 C -0.23 -5.84 8.87 -15.06 -0.13 -5.97 16 4 H 0.12 3.02 7.16 -52.49 -0.38 2.64 16 5 C 0.03 0.76 5.13 -17.43 -0.09 0.67 16 6 N -0.84 -20.95 10.57 55.49 0.59 -20.36 16 7 Si 0.93 19.17 29.57 -169.99 -5.03 14.14 16 8 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 11 S 2.54 63.56 5.54 -107.50 -0.60 62.97 16 12 O -0.98 -26.76 16.73 -57.18 -0.96 -27.72 16 13 O -1.01 -25.71 15.51 -57.18 -0.89 -26.60 16 14 C -0.68 -15.38 5.93 -39.30 -0.23 -15.62 16 15 C -0.01 -0.13 9.52 -39.67 -0.38 -0.51 16 16 C -0.18 -2.99 10.07 -39.52 -0.40 -3.39 16 17 C -0.04 -0.68 10.03 -39.72 -0.40 -1.07 16 18 C -0.21 -3.74 6.27 -104.10 -0.65 -4.39 16 19 C 0.21 4.56 6.70 -38.95 -0.26 4.29 16 20 O -0.27 -5.86 10.49 -20.96 -0.22 -6.08 16 21 C 0.05 0.71 8.00 38.06 0.30 1.02 16 22 C -0.10 -1.48 7.12 -26.52 -0.19 -1.67 16 23 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 24 H 0.07 1.74 7.18 -51.93 -0.37 1.37 16 25 H 0.04 0.95 6.93 -51.93 -0.36 0.59 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.14 2.56 7.30 -52.49 -0.38 2.18 16 28 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -31.51 292.58 -8.35 -39.86 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.55 Total: 3.20 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.89 Total: -23.20 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.37 Total: -40.99 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: -2.06 Total: -60.39 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 63.56 SS G_CDS: -0.60 Total: 62.97 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.51 -8.35 -39.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421230136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.933 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds