Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00498 * 2 1 4 4 H 1.07998 * 120.00075 * 202.32342 * 3 2 1 5 5 C 1.38813 * 119.99738 * 22.32010 * 3 2 1 6 6 N 1.31624 * 120.00002 * 11.15069 * 5 3 2 7 7 Si 1.86797 * 119.99778 * 191.14735 * 5 3 2 8 8 H 1.48493 * 109.47270 * 60.00428 * 7 5 3 9 9 H 1.48508 * 109.46853 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47206 * 299.99962 * 7 5 3 11 11 S 1.65602 * 119.99572 * 179.97438 * 2 1 3 12 12 O 1.42100 * 106.40145 * 156.46220 * 11 2 1 13 13 O 1.42095 * 106.40401 * 23.54452 * 11 2 1 14 14 C 1.76196 * 107.21922 * 269.99937 * 11 2 1 15 15 C 1.37981 * 119.87895 * 115.02610 * 14 11 2 16 16 C 1.38249 * 120.34710 * 180.02562 * 15 14 11 17 17 C 1.38388 * 119.76992 * 359.78483 * 16 15 14 18 18 C 1.37693 * 119.98093 * 0.03541 * 17 16 15 19 19 C 1.38924 * 120.78130 * 0.33073 * 18 17 16 20 20 O 1.36380 * 111.31724 * 179.08970 * 19 18 17 21 21 C 1.43767 * 109.10220 * 18.75444 * 20 19 18 22 22 C 1.51648 * 132.18756 * 180.35812 * 18 17 16 23 23 H 1.08996 * 109.46996 * 274.22585 * 1 2 3 24 24 H 1.09001 * 109.46811 * 34.22364 * 1 2 3 25 25 H 1.08997 * 109.47151 * 154.22186 * 1 2 3 26 26 H 0.97001 * 119.99915 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.82747 * 359.97438 * 15 14 11 28 28 H 1.08004 * 120.11186 * 179.83133 * 16 15 14 29 29 H 1.08007 * 120.00785 * 180.02562 * 17 16 15 30 30 H 1.08994 * 110.75146 * 214.07736 * 21 20 19 31 31 H 1.08998 * 110.74760 * 90.90831 * 21 20 19 32 32 H 1.08993 * 110.93838 * 46.43697 * 22 18 17 33 33 H 1.09004 * 110.96597 * 282.76744 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1691 1.2208 -0.3553 5 6 1.5338 2.3430 0.4566 6 7 0.3819 2.2696 1.0893 7 14 2.3396 4.0042 0.1730 8 1 2.4994 4.2344 -1.2852 9 1 1.4873 5.0732 0.7529 10 1 3.6728 4.0257 0.8267 11 16 2.2929 -1.4342 0.0006 12 8 3.5759 -1.1572 -0.5439 13 8 1.4113 -2.4067 -0.5434 14 6 2.5537 -1.8852 1.6838 15 6 1.9582 -3.0218 2.1911 16 6 2.1558 -3.3844 3.5105 17 6 2.9589 -2.6049 4.3244 18 6 3.5571 -1.4722 3.8193 19 6 3.3600 -1.0934 2.4973 20 8 4.0233 0.0627 2.2087 21 6 5.0434 0.2795 3.1984 22 6 4.4762 -0.4408 4.4446 23 1 -0.3633 0.0757 1.0248 24 1 -0.3633 0.8497 -0.5780 25 1 -0.3633 -0.9254 -0.4469 26 1 -0.0483 3.0782 1.4087 27 1 1.3338 -3.6310 1.5543 28 1 1.6857 -4.2735 3.9043 29 1 3.1162 -2.8848 5.3557 30 1 5.1725 1.3441 3.3931 31 1 5.9855 -0.1717 2.8871 32 1 5.2724 -0.9219 5.0125 33 1 3.9156 0.2513 5.0730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421230136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -84.008466 kcal Electronic energy + Delta-G solvation = -21228.193962 eV Core-core repulsion = 17960.251892 eV Total energy + Delta-G solvation = -3267.942070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98046 -38.41379 -37.71056 -37.45479 -36.42903 -33.68563 -33.26909 -31.11692 -30.14220 -28.26522 -25.35619 -24.59572 -23.49789 -22.82305 -20.26985 -19.10600 -18.67566 -18.24061 -17.80832 -17.36039 -16.93710 -16.35169 -16.18333 -15.81278 -15.10103 -14.63945 -14.50315 -14.33484 -13.94951 -13.72899 -13.60626 -13.15454 -13.13213 -13.00162 -12.74988 -12.68994 -12.66108 -12.41727 -12.35484 -12.12421 -11.90384 -11.79719 -11.32770 -11.02415 -10.17987 -9.89689 -9.16227 -8.29738 -5.86695 -0.15335 0.06819 0.34463 1.48250 1.53115 1.59518 2.27321 2.34866 2.50207 2.73772 2.98723 3.21258 3.43511 3.64596 3.86108 4.04762 4.13585 4.19250 4.42792 4.45718 4.55767 4.60677 4.83224 4.86702 5.00895 5.02532 5.15816 5.25087 5.27399 5.36191 5.43828 5.63193 5.68343 6.18011 6.47673 6.86221 7.32183 8.68493 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.009495 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.473985 B = 2948.257532 C = 3827.815675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.825 5.825 3 C -0.261 4.261 4 H 0.098 0.902 5 C 0.001 3.999 6 N -0.868 5.868 7 Si 0.983 3.017 8 H -0.267 1.267 9 H -0.272 1.272 10 H -0.264 1.264 11 S 2.566 3.434 12 O -1.011 7.011 13 O -1.019 7.019 14 C -0.715 4.715 15 C -0.027 4.027 16 C -0.170 4.170 17 C -0.030 4.030 18 C -0.211 4.211 19 C 0.175 3.825 20 O -0.310 6.310 21 C 0.030 3.970 22 C -0.093 4.093 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.276 0.724 27 H 0.141 0.859 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -3.259 10.421 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.651 5.651 3 C -0.406 4.406 4 H 0.115 0.885 5 C -0.208 4.208 6 N -0.509 5.509 7 Si 0.805 3.195 8 H -0.192 1.192 9 H -0.196 1.196 10 H -0.189 1.189 11 S 2.667 3.333 12 O -1.001 7.001 13 O -1.009 7.009 14 C -0.798 4.798 15 C -0.046 4.046 16 C -0.188 4.188 17 C -0.048 4.048 18 C -0.213 4.213 19 C 0.127 3.873 20 O -0.223 6.223 21 C -0.044 4.044 22 C -0.130 4.130 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.186 0.814 29 H 0.188 0.812 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.540 -3.711 9.612 11.259 hybrid contribution 0.181 0.748 0.498 0.917 sum 4.721 -2.963 10.110 11.545 Atomic orbital electron populations 1.21190 0.78683 1.00029 1.01275 1.53797 1.13455 1.18533 1.79322 1.19807 1.00311 0.83930 1.36562 0.88470 1.26326 0.96864 1.03282 0.94280 1.70174 1.16423 1.30818 1.33451 0.85145 0.78590 0.76547 0.79179 1.19222 1.19647 1.18898 1.09138 0.73048 0.73909 0.77244 1.93321 1.42621 1.85065 1.79096 1.93286 1.65789 1.62181 1.79600 1.30815 1.13426 1.05650 1.29951 1.20923 0.94239 0.92270 0.97204 1.21547 1.01694 1.02573 0.93014 1.20930 0.92106 0.90703 1.01025 1.21393 1.05863 1.00452 0.93577 1.19268 0.89898 0.84604 0.93519 1.87160 1.46997 1.35739 1.52429 1.24273 0.90368 1.03910 0.85889 1.21824 0.98355 0.95261 0.97536 0.93861 0.91247 0.92905 0.91403 0.84156 0.81380 0.81205 0.85716 0.89405 0.85668 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.55 8.92 127.77 1.14 7.68 16 2 N -0.83 -43.66 3.31 -364.90 -1.21 -44.87 16 3 C -0.26 -14.11 8.87 84.03 0.75 -13.37 16 4 H 0.10 5.43 7.16 -2.91 -0.02 5.41 16 5 C 0.00 0.03 5.13 84.86 0.44 0.47 16 6 N -0.87 -44.30 10.57 21.65 0.23 -44.07 16 7 Si 0.98 39.85 29.57 68.60 2.03 41.88 16 8 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 9 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 S 2.57 133.28 5.54 -56.49 -0.31 132.96 16 12 O -1.01 -57.76 16.73 -128.00 -2.14 -59.90 16 13 O -1.02 -53.46 15.51 -128.00 -1.98 -55.44 16 14 C -0.71 -32.75 5.93 22.45 0.13 -32.62 16 15 C -0.03 -1.04 9.52 22.21 0.21 -0.83 16 16 C -0.17 -4.93 10.07 22.31 0.22 -4.71 16 17 C -0.03 -0.81 10.03 22.18 0.22 -0.58 16 18 C -0.21 -6.95 6.27 -19.53 -0.12 -7.07 16 19 C 0.18 7.58 6.70 22.68 0.15 7.73 16 20 O -0.31 -13.69 10.49 -97.91 -1.03 -14.72 16 21 C 0.03 0.88 8.00 72.57 0.58 1.46 16 22 C -0.09 -2.26 7.12 30.73 0.22 -2.05 16 23 H 0.04 2.13 7.42 -2.39 -0.02 2.11 16 24 H 0.07 3.38 7.18 -2.39 -0.02 3.37 16 25 H 0.05 2.39 6.93 -2.39 -0.02 2.38 16 26 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 27 H 0.14 5.14 7.30 -2.91 -0.02 5.11 16 28 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -71.62 292.58 0.66 -70.96 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.13 Total: 17.08 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.94 Total: -43.88 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -0.98 Total: -88.94 kcal Atomic # 8 Polarization: -124.91 SS G_CDS: -5.15 Total: -130.06 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 133.28 SS G_CDS: -0.31 Total: 132.96 kcal Total: -71.62 0.66 -70.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421230136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.051 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds