Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21291 * 120.00329 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.37098 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00172 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99909 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00218 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46707 * 89.99791 * 18 16 14 20 20 H 1.48495 * 109.46952 * 209.99634 * 18 16 14 21 21 H 1.48499 * 109.47120 * 329.99796 * 18 16 14 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 25 25 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 30 30 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 31 31 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 32 32 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 8 8.4380 2.7529 0.9626 13 7 8.2553 2.7419 3.1737 14 6 9.6155 2.8161 3.3282 15 1 10.2565 2.8522 2.4598 16 6 10.1694 2.8450 4.6022 17 7 9.3895 2.8017 5.6590 18 14 12.0228 2.9454 4.8128 19 1 12.4379 4.3701 4.8699 20 1 12.4154 2.2646 6.0727 21 1 12.6883 2.2815 3.6632 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.7567 3.4980 2.2383 30 1 5.8524 1.7207 2.2369 31 1 7.6796 2.7099 3.9537 32 1 9.7761 2.8222 6.5483 33 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424631862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -84.087119 kcal Electronic energy + Delta-G solvation = -18992.078772 eV Core-core repulsion = 15724.133291 eV Total energy + Delta-G solvation = -3267.945481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20747 -38.14496 -37.49254 -35.37948 -34.05060 -31.43597 -31.29101 -30.27561 -29.13122 -27.53380 -24.66022 -22.99151 -22.37676 -19.64261 -18.76887 -17.98279 -16.89169 -16.37800 -16.19023 -16.09244 -15.97794 -14.92974 -14.78915 -14.52601 -14.32201 -13.96043 -13.71080 -13.61975 -12.85145 -12.60874 -12.36722 -12.31786 -11.87115 -11.60521 -11.41422 -11.34876 -11.23392 -11.06130 -10.42040 -10.29323 -9.99014 -9.58991 -9.33115 -8.65700 -8.40380 -8.08002 -8.02409 -6.47726 -3.89109 0.81170 1.29466 2.02801 2.97150 3.13337 3.15228 3.25039 3.31184 3.59227 3.77746 4.13292 4.23628 4.56903 4.74142 4.82884 4.84369 4.95691 5.13126 5.18282 5.18737 5.29825 5.35971 5.71509 5.78149 5.88455 6.06211 6.19539 6.22722 6.25812 6.48895 7.18255 7.50558 7.96595 8.48947 9.08498 9.44441 9.93208 10.69474 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030638 B = 0.003468 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.680316 B = 8072.750268 C = 8472.237956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.106 3.894 4 C -0.180 4.180 5 C -0.098 4.098 6 C -0.092 4.092 7 C -0.434 4.434 8 S 1.388 4.612 9 O -0.838 6.838 10 C -0.474 4.474 11 C 0.461 3.539 12 O -0.596 6.596 13 N -0.549 5.549 14 C -0.304 4.304 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.898 5.898 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.073 4.073 23 H 0.100 0.900 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.395 0.605 32 H 0.273 0.727 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.311 -6.456 -7.974 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.060 3.940 4 C -0.199 4.199 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.527 4.527 8 S 1.581 4.419 9 O -0.833 6.833 10 C -0.612 4.612 11 C 0.246 3.754 12 O -0.483 6.483 13 N -0.183 5.183 14 C -0.433 4.433 15 H 0.125 0.875 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.092 4.092 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.113 -6.567 -9.155 20.488 hybrid contribution -1.071 2.008 2.006 3.033 sum -18.183 -4.559 -7.149 20.063 Atomic orbital electron populations 1.23047 0.78587 1.03956 1.01208 1.86082 1.21194 1.26677 1.88967 1.19129 0.92669 0.84140 0.98064 1.21354 0.99922 0.92603 1.06032 1.21044 0.94789 0.97076 0.98855 1.21133 0.93886 0.98416 0.97681 1.28445 1.21751 0.95911 1.06639 1.70250 0.78723 1.07795 0.85167 1.93036 1.78475 1.43644 1.68150 1.27954 1.02205 1.08259 1.22763 1.18826 0.86705 0.85220 0.84689 1.90561 1.61863 1.57469 1.38427 1.41835 1.08101 1.62473 1.05926 1.19802 0.81961 1.47683 0.93885 0.87518 1.25323 1.00764 0.96904 0.94820 1.69618 1.35981 1.49758 0.98516 0.85815 0.81852 0.78502 0.77898 1.20343 1.20834 1.19162 1.20126 0.91096 0.97408 1.00620 0.88162 0.92750 0.92791 0.85465 0.85747 0.85333 0.88070 0.85238 0.77170 0.91698 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.24 10.50 -19.41 -0.20 -3.44 16 3 C 0.11 1.21 6.69 -39.22 -0.26 0.95 16 4 C -0.18 -1.92 9.04 -39.43 -0.36 -2.27 16 5 C -0.10 -1.16 10.04 -39.61 -0.40 -1.55 16 6 C -0.09 -1.31 9.44 -39.56 -0.37 -1.68 16 7 C -0.43 -5.94 5.61 -39.61 -0.22 -6.16 16 8 S 1.39 21.83 12.68 -107.50 -1.36 20.47 16 9 O -0.84 -18.13 16.89 -35.23 -0.60 -18.72 16 10 C -0.47 -8.26 6.37 36.00 0.23 -8.03 16 11 C 0.46 10.93 7.80 -10.99 -0.09 10.85 16 12 O -0.60 -15.95 15.44 5.55 0.09 -15.86 16 13 N -0.55 -14.06 5.29 -10.97 -0.06 -14.11 16 14 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 15 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 16 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 18 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.07 -0.85 9.69 -39.43 -0.38 -1.23 16 23 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 25 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 26 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.98 7.45 -52.48 -0.39 1.59 16 29 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 31 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -36.56 307.37 -6.37 -42.92 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.46 Total: 7.91 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.10 Total: -16.03 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.67 Total: -37.76 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.71 Total: -38.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 21.83 SS G_CDS: -1.36 Total: 20.47 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.56 -6.37 -42.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424631862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.163 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds