Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21291 * 120.00329 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.37098 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00172 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99909 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00218 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99971 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46707 * 89.99791 * 18 16 14 20 20 H 1.48495 * 109.46952 * 209.99634 * 18 16 14 21 21 H 1.48499 * 109.47120 * 329.99796 * 18 16 14 22 22 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 23 23 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 25 25 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 26 26 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 30 30 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 31 31 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 32 32 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 33 33 H 1.07997 * 120.02798 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 8 8.4380 2.7529 0.9626 13 7 8.2553 2.7419 3.1737 14 6 9.6155 2.8161 3.3282 15 1 10.2565 2.8522 2.4598 16 6 10.1694 2.8450 4.6022 17 7 9.3895 2.8017 5.6590 18 14 12.0228 2.9454 4.8128 19 1 12.4379 4.3701 4.8699 20 1 12.4154 2.2646 6.0727 21 1 12.6883 2.2815 3.6632 22 6 3.4311 1.2848 0.0003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 0.2128 2.3203 0.0108 27 1 1.3339 4.5114 0.0034 28 1 3.7922 4.6381 0.0022 29 1 5.7567 3.4980 2.2383 30 1 5.8524 1.7207 2.2369 31 1 7.6796 2.7099 3.9537 32 1 9.7761 2.8222 6.5483 33 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424631862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -112.153189 kcal Electronic energy + Delta-G solvation = -18993.295808 eV Core-core repulsion = 15724.133291 eV Total energy + Delta-G solvation = -3269.162517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02076 -40.09700 -38.33461 -36.89581 -36.08070 -33.40248 -32.25828 -31.18962 -30.72670 -28.11612 -26.66676 -23.90980 -23.29418 -21.47179 -20.09894 -19.63929 -18.16557 -17.83792 -17.21006 -17.05373 -16.71916 -16.60533 -16.26754 -16.13321 -15.91742 -15.32759 -14.87898 -14.56511 -14.24177 -13.96167 -13.70169 -13.53358 -13.28141 -12.98242 -12.85350 -12.68118 -12.45467 -12.12335 -12.07728 -12.03690 -11.57436 -11.36373 -10.63402 -10.26469 -10.09650 -9.41957 -9.25001 -8.51277 -6.01297 -0.19945 0.36779 0.80280 1.36392 1.42245 1.55706 1.80256 1.92737 2.28736 2.38872 2.60939 2.90936 3.16248 3.21780 3.79107 3.99440 4.13725 4.19633 4.27994 4.32041 4.44348 4.48849 4.51143 4.63384 4.78585 4.92823 5.14855 5.27441 5.32411 5.38465 5.59117 5.91191 6.42040 6.48101 7.03561 7.44582 7.97424 8.65839 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030638 B = 0.003468 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.680316 B = 8072.750268 C = 8472.237956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.103 3.897 4 C -0.172 4.172 5 C -0.100 4.100 6 C -0.121 4.121 7 C -0.439 4.439 8 S 1.429 4.571 9 O -0.904 6.904 10 C -0.470 4.470 11 C 0.457 3.543 12 O -0.630 6.630 13 N -0.561 5.561 14 C -0.340 4.340 15 H 0.085 0.915 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.996 3.004 19 H -0.274 1.274 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.074 4.074 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.160 0.840 27 H 0.146 0.854 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.173 0.827 31 H 0.398 0.602 32 H 0.280 0.720 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.331 -7.914 -7.565 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.057 3.943 4 C -0.191 4.191 5 C -0.119 4.119 6 C -0.141 4.141 7 C -0.536 4.536 8 S 1.625 4.375 9 O -0.900 6.900 10 C -0.607 4.607 11 C 0.244 3.756 12 O -0.519 6.519 13 N -0.196 5.196 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.819 3.181 19 H -0.200 1.200 20 H -0.192 1.192 21 H -0.192 1.192 22 C -0.094 4.094 23 H 0.139 0.861 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.178 0.822 27 H 0.164 0.836 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.191 0.809 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.128 -8.026 -8.731 22.506 hybrid contribution -0.693 2.375 1.836 3.081 sum -19.821 -5.651 -6.895 21.733 Atomic orbital electron populations 1.23388 0.76428 1.05817 1.02256 1.86080 1.23411 1.25889 1.88595 1.19262 0.92738 0.85015 0.97284 1.21720 1.01619 0.91695 1.04023 1.21273 0.93759 0.98731 0.98154 1.21139 0.95424 0.97649 0.99862 1.27860 1.19626 0.96939 1.09192 1.69477 0.79677 1.05315 0.82992 1.92927 1.81156 1.46165 1.69737 1.27944 0.97406 1.10509 1.24791 1.19777 0.89213 0.83065 0.83584 1.90534 1.63730 1.58283 1.39385 1.41922 1.07610 1.63346 1.06735 1.19806 0.83117 1.50113 0.93920 0.89664 1.26129 1.05139 0.95808 0.94063 1.69676 1.37675 1.49547 0.98933 0.84885 0.76427 0.78571 0.78222 1.20001 1.19226 1.19151 1.20423 0.92047 0.97422 0.99486 0.86125 0.91737 0.91596 0.82249 0.83590 0.87726 0.87865 0.80925 0.76752 0.91084 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.54 10.50 -92.38 -0.97 -6.51 16 3 C 0.10 2.05 6.69 22.51 0.15 2.20 16 4 C -0.17 -3.09 9.04 22.37 0.20 -2.88 16 5 C -0.10 -2.16 10.04 22.25 0.22 -1.94 16 6 C -0.12 -3.43 9.44 22.28 0.21 -3.22 16 7 C -0.44 -11.66 5.61 22.25 0.12 -11.53 16 8 S 1.43 45.42 12.68 -56.49 -0.72 44.70 16 9 O -0.90 -40.84 16.89 -148.98 -2.52 -43.35 16 10 C -0.47 -16.22 6.37 71.23 0.45 -15.77 16 11 C 0.46 22.11 7.80 87.65 0.68 22.79 16 12 O -0.63 -34.84 15.44 -3.07 -0.05 -34.89 16 13 N -0.56 -29.33 5.29 -306.99 -1.62 -30.95 16 14 C -0.34 -19.45 9.68 84.04 0.81 -18.63 16 15 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 16 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 17 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 18 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.07 -1.56 9.69 22.37 0.22 -1.34 16 23 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 24 H 0.06 0.45 7.65 -2.39 -0.02 0.43 16 25 H 0.07 0.43 7.68 -2.39 -0.02 0.42 16 26 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 27 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.10 3.40 7.45 -2.91 -0.02 3.38 16 29 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.17 4.37 8.14 -2.39 -0.02 4.35 16 31 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 32 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -81.16 307.37 1.51 -79.65 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.42 Total: 25.09 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.66 Total: -29.21 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -1.34 Total: -80.32 kcal Atomic # 8 Polarization: -81.21 SS G_CDS: -3.53 Total: -84.75 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.72 Total: 44.70 kcal Total: -81.16 1.51 -79.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424631862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.508 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds