Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42105 * 102.99822 * 203.84882 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21291 * 120.00329 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.37098 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00172 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99909 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00218 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99987 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47655 * 59.99625 * 18 16 14 20 20 H 1.48501 * 109.47293 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46963 * 299.99341 * 18 16 14 22 22 C 1.38172 * 120.05200 * 0.03764 * 7 6 5 23 23 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 24 24 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 26 26 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 30 30 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 31 31 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 32 32 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.02832 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0006 9 8 6.2028 1.3646 -0.5594 10 6 6.2228 2.6337 1.7681 11 6 7.7179 2.7149 1.9381 12 8 8.4379 2.7537 0.9628 13 7 8.2551 2.7444 3.1738 14 6 9.6153 2.8188 3.3284 15 1 10.2564 2.8541 2.4600 16 6 10.1691 2.8486 4.6024 17 7 9.3891 2.8061 5.6591 18 14 12.0224 2.9507 4.8130 19 1 12.5257 4.1930 4.1739 20 1 12.3559 2.9689 6.2600 21 1 12.6590 1.7716 4.1728 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2128 2.3203 0.0107 27 1 1.3339 4.5114 0.0017 28 1 3.7922 4.6381 0.0005 29 1 5.7565 3.4998 2.2377 30 1 5.8523 1.7225 2.2377 31 1 7.6793 2.7130 3.9538 32 1 9.7757 2.8273 6.5485 33 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424631863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -84.160257 kcal Electronic energy + Delta-G solvation = -19016.333734 eV Core-core repulsion = 15748.385081 eV Total energy + Delta-G solvation = -3267.948652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19136 -38.14303 -37.47644 -35.38233 -34.04979 -31.42137 -31.24725 -30.30521 -29.12901 -27.52219 -24.65779 -22.94315 -22.41288 -19.64222 -18.77850 -17.97864 -16.82751 -16.43009 -16.12048 -16.07811 -15.96069 -14.95954 -14.79107 -14.47996 -14.27284 -14.03672 -13.69430 -13.62333 -12.84052 -12.59890 -12.36351 -12.24732 -11.97868 -11.60749 -11.43593 -11.36816 -11.11292 -11.02194 -10.47082 -10.28567 -9.97104 -9.57832 -9.32321 -8.65692 -8.39164 -8.08818 -8.03116 -6.47550 -3.89011 0.82116 1.30159 2.05603 2.94710 3.17291 3.17589 3.24322 3.29119 3.60321 3.77962 4.13487 4.25081 4.57748 4.75128 4.83738 4.85350 4.96171 5.08460 5.17445 5.18600 5.30563 5.40692 5.71381 5.81144 5.88738 6.09347 6.17986 6.22470 6.25408 6.50029 7.21585 7.50450 7.96463 8.49092 9.08483 9.44497 9.93351 10.69579 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003429 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.502470 B = 8163.478429 C = 8359.216372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.108 3.892 4 C -0.181 4.181 5 C -0.100 4.100 6 C -0.081 4.081 7 C -0.433 4.433 8 S 1.387 4.613 9 O -0.837 6.837 10 C -0.474 4.474 11 C 0.460 3.540 12 O -0.596 6.596 13 N -0.549 5.549 14 C -0.305 4.305 15 H 0.107 0.893 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.933 3.067 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.085 4.085 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 3.722 -7.951 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.527 4.527 8 S 1.580 4.420 9 O -0.833 6.833 10 C -0.612 4.612 11 C 0.245 3.755 12 O -0.484 6.484 13 N -0.183 5.183 14 C -0.434 4.434 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.760 3.240 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.105 4.105 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.147 0.853 30 H 0.120 0.880 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.678 3.557 -9.125 20.209 hybrid contribution -0.842 -1.752 1.990 2.782 sum -18.519 1.804 -7.135 19.928 Atomic orbital electron populations 1.23050 0.78587 1.03955 1.01185 1.86112 1.21230 1.26956 1.88894 1.19175 0.92493 0.84288 0.97889 1.21360 0.99887 0.92634 1.06146 1.21071 0.94981 0.96913 0.98939 1.20814 0.93392 0.97406 0.98390 1.28476 1.21776 0.95817 1.06641 1.70171 0.77371 1.09289 0.85145 1.93051 1.76111 1.46001 1.68098 1.27957 1.02296 1.08142 1.22814 1.18828 0.86725 0.85224 0.84685 1.90560 1.61859 1.57508 1.38431 1.41828 1.08078 1.62464 1.05929 1.19754 0.81986 1.47805 0.93867 0.87571 1.25321 1.00758 0.96886 0.94813 1.69610 1.36063 1.49676 0.98538 0.85874 0.81820 0.79243 0.77058 1.19657 1.20923 1.19780 1.20519 0.91476 0.98551 0.99947 0.92729 0.88251 0.92695 0.85470 0.85269 0.84200 0.85269 0.88049 0.77167 0.91640 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -4.11 10.50 -19.42 -0.20 -4.31 16 3 C 0.11 1.45 6.69 -39.22 -0.26 1.19 16 4 C -0.18 -1.92 9.04 -39.43 -0.36 -2.28 16 5 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 6 C -0.08 -0.83 9.75 -39.56 -0.39 -1.22 16 7 C -0.43 -5.93 5.61 -39.60 -0.22 -6.15 16 8 S 1.39 21.82 12.68 -107.50 -1.36 20.46 16 9 O -0.84 -18.43 16.90 -35.23 -0.60 -19.03 16 10 C -0.47 -8.27 6.37 36.00 0.23 -8.04 16 11 C 0.46 10.94 7.80 -10.99 -0.09 10.85 16 12 O -0.60 -15.97 15.44 5.55 0.09 -15.88 16 13 N -0.55 -14.06 5.29 -10.97 -0.06 -14.12 16 14 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 15 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 18 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 C -0.09 -1.33 9.38 -39.43 -0.37 -1.70 16 23 H 0.05 0.35 7.68 -51.93 -0.40 -0.05 16 24 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 27 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 30 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 31 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.13 2.35 7.45 -52.49 -0.39 1.96 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -37.32 307.38 -6.37 -43.69 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.46 Total: 7.88 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.10 Total: -15.57 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.67 Total: -37.78 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.71 Total: -39.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 21.82 SS G_CDS: -1.36 Total: 20.46 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -37.32 -6.37 -43.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424631863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.472 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds