Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42105 * 102.99822 * 203.84882 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21291 * 120.00329 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.37098 * 119.99987 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00172 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99909 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00218 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99987 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47655 * 59.99625 * 18 16 14 20 20 H 1.48501 * 109.47293 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46963 * 299.99341 * 18 16 14 22 22 C 1.38172 * 120.05200 * 0.03764 * 7 6 5 23 23 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 24 24 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 26 26 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 28 28 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 29 29 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 30 30 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 31 31 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 32 32 H 0.96996 * 119.99917 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.02832 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0006 9 8 6.2028 1.3646 -0.5594 10 6 6.2228 2.6337 1.7681 11 6 7.7179 2.7149 1.9381 12 8 8.4379 2.7537 0.9628 13 7 8.2551 2.7444 3.1738 14 6 9.6153 2.8188 3.3284 15 1 10.2564 2.8541 2.4600 16 6 10.1691 2.8486 4.6024 17 7 9.3891 2.8061 5.6591 18 14 12.0224 2.9507 4.8130 19 1 12.5257 4.1930 4.1739 20 1 12.3559 2.9689 6.2600 21 1 12.6590 1.7716 4.1728 22 6 3.4311 1.2848 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2128 2.3203 0.0107 27 1 1.3339 4.5114 0.0017 28 1 3.7922 4.6381 0.0005 29 1 5.7565 3.4998 2.2377 30 1 5.8523 1.7225 2.2377 31 1 7.6793 2.7130 3.9538 32 1 9.7757 2.8273 6.5485 33 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424631863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -113.684712 kcal Electronic energy + Delta-G solvation = -19017.614010 eV Core-core repulsion = 15748.385081 eV Total energy + Delta-G solvation = -3269.228929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06213 -40.09977 -38.34750 -36.92138 -36.08394 -33.40586 -32.20181 -31.20941 -30.72827 -28.19305 -26.66789 -23.88470 -23.30422 -21.47348 -20.10901 -19.68851 -18.13878 -17.81386 -17.28872 -16.95618 -16.77263 -16.65892 -16.32505 -16.12695 -15.83695 -15.32223 -14.98872 -14.55058 -14.26751 -13.95688 -13.70204 -13.53305 -13.32694 -12.96251 -12.77301 -12.69820 -12.47101 -12.14564 -12.12599 -12.02542 -11.56567 -11.32946 -10.63495 -10.25295 -10.09945 -9.46073 -9.24870 -8.51384 -6.01562 -0.18368 0.40976 0.83877 1.38179 1.41968 1.53363 1.80170 1.92600 2.28809 2.33374 2.65036 2.92479 3.16110 3.21894 3.78505 4.00236 4.18717 4.20528 4.30412 4.33521 4.35344 4.44047 4.56670 4.63223 4.65779 4.86834 5.20829 5.33017 5.37570 5.37930 5.73355 5.90766 6.38615 6.47852 7.03158 7.44234 7.97143 8.65502 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003429 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.502470 B = 8163.478429 C = 8359.216372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.350 6.350 3 C 0.091 3.909 4 C -0.172 4.172 5 C -0.090 4.090 6 C -0.071 4.071 7 C -0.441 4.441 8 S 1.433 4.567 9 O -0.911 6.911 10 C -0.470 4.470 11 C 0.456 3.544 12 O -0.631 6.631 13 N -0.560 5.560 14 C -0.342 4.342 15 H 0.085 0.915 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.996 3.004 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.275 1.275 22 C -0.128 4.128 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.161 0.839 27 H 0.176 0.824 28 H 0.186 0.814 29 H 0.178 0.822 30 H 0.098 0.902 31 H 0.398 0.602 32 H 0.280 0.720 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.291 6.125 -7.528 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.265 6.265 3 C 0.045 3.955 4 C -0.191 4.191 5 C -0.108 4.108 6 C -0.091 4.091 7 C -0.538 4.538 8 S 1.629 4.371 9 O -0.907 6.907 10 C -0.607 4.607 11 C 0.243 3.757 12 O -0.520 6.520 13 N -0.196 5.196 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.819 3.181 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.201 1.201 22 C -0.148 4.148 23 H 0.089 0.911 24 H 0.132 0.868 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.194 0.806 28 H 0.203 0.797 29 H 0.195 0.805 30 H 0.116 0.884 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.079 5.955 -8.687 22.674 hybrid contribution -0.337 -2.484 1.815 3.095 sum -20.416 3.471 -6.873 21.820 Atomic orbital electron populations 1.23383 0.76030 1.05594 1.02658 1.86071 1.23991 1.27374 1.89026 1.19294 0.91946 0.85692 0.98541 1.21819 1.01490 0.91839 1.03919 1.21659 0.94811 0.98106 0.96256 1.21407 0.94109 0.97679 0.95857 1.27939 1.19721 0.96767 1.09393 1.69221 0.78229 1.06781 0.82846 1.92937 1.79152 1.48660 1.69955 1.27955 0.97722 1.10133 1.24850 1.19785 0.89251 0.83070 0.83582 1.90533 1.63722 1.58329 1.39393 1.41916 1.07595 1.63329 1.06732 1.19775 0.83154 1.50235 0.93933 0.89664 1.26130 1.05147 0.95777 0.94048 1.69671 1.37750 1.49459 0.98936 0.84945 0.76346 0.79196 0.77617 1.18838 1.19387 1.20073 1.20406 0.92865 0.97940 1.03559 0.91069 0.86819 0.91169 0.82180 0.80639 0.79717 0.80467 0.88363 0.76751 0.91064 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.35 -9.03 10.50 -92.39 -0.97 -10.00 16 3 C 0.09 2.40 6.69 22.51 0.15 2.55 16 4 C -0.17 -2.99 9.04 22.37 0.20 -2.79 16 5 C -0.09 -1.23 10.04 22.25 0.22 -1.00 16 6 C -0.07 -1.18 9.75 22.28 0.22 -0.96 16 7 C -0.44 -11.68 5.61 22.25 0.12 -11.56 16 8 S 1.43 45.74 12.68 -56.49 -0.72 45.02 16 9 O -0.91 -42.74 16.90 -148.98 -2.52 -45.26 16 10 C -0.47 -16.30 6.37 71.23 0.45 -15.85 16 11 C 0.46 22.16 7.80 87.65 0.68 22.84 16 12 O -0.63 -34.97 15.44 -3.07 -0.05 -35.02 16 13 N -0.56 -29.39 5.29 -306.99 -1.62 -31.01 16 14 C -0.34 -19.57 9.68 84.04 0.81 -18.75 16 15 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 18 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 C -0.13 -4.11 9.38 22.37 0.21 -3.90 16 23 H 0.07 0.71 7.68 -2.39 -0.02 0.69 16 24 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 26 H 0.16 1.67 6.30 -2.91 -0.02 1.65 16 27 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 28 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.18 4.31 8.14 -2.39 -0.02 4.29 16 30 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 32 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.09 3.66 7.45 -2.91 -0.02 3.64 16 Total: -1.00 -86.78 307.38 1.51 -85.27 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.42 Total: 23.75 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.66 Total: -28.18 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.34 Total: -80.44 kcal Atomic # 8 Polarization: -86.75 SS G_CDS: -3.53 Total: -90.28 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.72 Total: 45.02 kcal Total: -86.78 1.51 -85.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424631863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.410 kcal (2) G-P(sol) polarization free energy of solvation -86.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds