Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99940 * 2 1 4 4 C 1.38757 * 120.07439 * 0.02562 * 3 2 1 5 5 C 1.38046 * 119.90194 * 179.97438 * 4 3 2 6 6 C 1.38491 * 120.18337 * 359.96403 * 5 4 3 7 7 C 1.38117 * 120.01967 * 0.03766 * 6 5 4 8 8 C 1.38361 * 119.98950 * 359.97438 * 7 6 5 9 9 C 1.50789 * 108.86032 * 179.97438 * 7 6 5 10 10 N 1.46627 * 107.70418 * 0.02562 * 9 7 6 11 11 S 1.65592 * 126.55991 * 180.26325 * 10 9 7 12 12 O 1.42106 * 106.40276 * 23.24791 * 11 10 9 13 13 O 1.42105 * 106.40539 * 156.16818 * 11 10 9 14 14 C 1.76197 * 107.21928 * 269.70859 * 11 10 9 15 15 H 1.08002 * 120.00024 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00552 * 179.97438 * 14 11 10 17 17 N 1.31508 * 120.00511 * 179.97438 * 16 14 11 18 18 Si 1.86805 * 119.99513 * 0.02562 * 16 14 11 19 19 H 1.48511 * 109.46900 * 89.99964 * 18 16 14 20 20 H 1.48497 * 109.47109 * 209.99806 * 18 16 14 21 21 H 1.48496 * 109.47181 * 330.00010 * 18 16 14 22 22 C 1.46636 * 106.88300 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47306 * 60.00169 * 1 2 3 24 24 H 1.09004 * 109.46709 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47508 * 299.99899 * 1 2 3 26 26 H 1.07996 * 120.04715 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.91127 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.96669 * 180.02562 * 8 7 6 29 29 H 1.08992 * 109.81036 * 240.45009 * 9 7 6 30 30 H 1.09005 * 109.81033 * 119.54737 * 9 7 6 31 31 H 0.97002 * 120.00077 * 180.02562 * 17 16 14 32 32 H 1.09000 * 109.80637 * 119.55461 * 22 10 9 33 33 H 1.08999 * 109.80790 * 240.45207 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2917 2.3756 0.0005 5 6 1.9221 3.6037 0.0011 6 6 3.3051 3.6765 0.0018 7 6 4.0580 2.5185 0.0013 8 6 3.4303 1.2855 0.0005 9 6 5.5200 2.8877 0.0016 10 7 5.6104 4.3512 0.0031 11 16 6.9987 5.2537 -0.0021 12 8 8.0154 4.4230 -0.5459 13 8 6.6531 6.5186 -0.5497 14 6 7.4391 5.5430 1.6793 15 1 6.8253 5.1459 2.4743 16 6 8.5672 6.2763 1.9802 17 7 8.8956 6.4926 3.2351 18 14 9.6285 6.9637 0.6052 19 1 9.1470 8.3201 0.2392 20 1 11.0390 7.0459 1.0625 21 1 9.5432 6.0719 -0.5790 22 6 4.2361 4.8627 0.0030 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2131 2.3213 0.0005 27 1 1.3352 4.5103 0.0011 28 1 4.0194 0.3803 0.0004 29 1 6.0021 2.4883 -0.8906 30 1 6.0019 2.4873 0.8936 31 1 9.6891 7.0089 3.4468 32 1 4.0660 5.4647 0.8956 33 1 4.0668 5.4664 -0.8886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692915119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -99.386641 kcal Electronic energy + Delta-G solvation = -19882.241466 eV Core-core repulsion = 16613.632548 eV Total energy + Delta-G solvation = -3268.608918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52144 -39.72284 -37.79778 -36.59615 -36.56472 -35.22215 -32.60939 -30.98423 -29.29107 -28.60155 -27.45597 -25.40658 -22.60317 -22.08163 -20.84623 -19.52925 -18.77636 -18.66168 -17.42377 -17.10872 -16.80441 -16.66484 -16.36746 -16.06262 -15.41272 -15.18545 -14.96413 -14.69887 -14.31002 -13.94386 -13.88692 -13.56187 -13.41331 -13.35977 -12.98733 -12.83511 -12.69323 -12.61715 -12.52575 -11.93616 -11.86782 -11.64222 -11.36008 -11.28309 -10.21606 -9.71467 -8.99508 -8.97803 -7.57726 -0.08293 0.26542 0.37752 1.04092 1.13761 1.20325 1.87529 2.25982 2.35917 2.40900 2.66746 3.28859 3.33344 3.49577 3.91081 4.04200 4.20268 4.29587 4.39062 4.45495 4.47110 4.50598 4.57993 4.60463 4.70651 4.80046 4.93966 5.16747 5.18609 5.30790 5.34696 5.38172 5.67220 5.73167 5.97681 6.45376 6.48927 8.18529 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.042282 B = 0.004264 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.062729 B = 6565.555125 C = 6605.112316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.125 3.875 4 C -0.197 4.197 5 C -0.054 4.054 6 C -0.149 4.149 7 C -0.070 4.070 8 C -0.142 4.142 9 C 0.158 3.842 10 N -1.015 6.015 11 S 2.723 3.277 12 O -1.016 7.016 13 O -1.016 7.016 14 C -1.041 5.041 15 H 0.103 0.897 16 C 0.108 3.892 17 N -0.852 5.852 18 Si 0.825 3.175 19 H -0.235 1.235 20 H -0.216 1.216 21 H -0.228 1.228 22 C 0.162 3.838 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.165 0.835 27 H 0.156 0.844 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.293 0.707 32 H 0.078 0.922 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 -9.892 -6.017 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.079 3.921 4 C -0.215 4.215 5 C -0.072 4.072 6 C -0.151 4.151 7 C -0.072 4.072 8 C -0.161 4.161 9 C 0.033 3.967 10 N -0.853 5.853 11 S 2.825 3.175 12 O -1.007 7.007 13 O -1.007 7.007 14 C -1.173 5.173 15 H 0.121 0.879 16 C -0.109 4.109 17 N -0.482 5.482 18 Si 0.641 3.359 19 H -0.159 1.159 20 H -0.138 1.138 21 H -0.150 1.150 22 C 0.037 3.963 23 H 0.087 0.913 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.183 0.817 27 H 0.174 0.826 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.750 -9.665 -6.636 20.446 hybrid contribution 0.538 0.481 0.740 1.034 sum -16.213 -9.184 -5.896 19.544 Atomic orbital electron populations 1.23389 0.76111 1.05679 1.02546 1.86047 1.23704 1.26271 1.88593 1.18855 0.91691 0.85192 0.96323 1.21441 1.01499 0.90866 1.07724 1.20570 0.91272 0.99083 0.96308 1.20394 0.94805 0.94215 1.05680 1.20066 0.94472 0.93694 0.98966 1.19697 0.92254 0.96910 1.07224 1.20061 0.93984 0.79530 1.03096 1.58063 1.19851 1.15870 1.91489 0.99900 0.70311 0.71627 0.75612 1.93435 1.56360 1.69750 1.81110 1.93379 1.83613 1.42631 1.81047 1.30996 1.21078 1.47465 1.17803 0.87912 1.25190 0.96055 0.91652 0.97972 1.70006 1.25470 1.33672 1.19029 0.87495 0.83418 0.83266 0.81698 1.15860 1.13805 1.15003 1.20040 0.78623 0.94792 1.02816 0.91323 0.86373 0.91478 0.81748 0.82611 0.84080 0.89297 0.90092 0.89649 0.90400 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.54 10.50 -92.45 -0.97 -7.51 16 3 C 0.12 2.80 6.68 22.49 0.15 2.95 16 4 C -0.20 -3.70 9.04 22.35 0.20 -3.50 16 5 C -0.05 -1.17 10.04 22.28 0.22 -0.94 16 6 C -0.15 -4.34 6.22 -19.80 -0.12 -4.46 16 7 C -0.07 -2.13 6.22 -19.84 -0.12 -2.25 16 8 C -0.14 -3.68 9.99 22.39 0.22 -3.45 16 9 C 0.16 5.59 7.03 85.64 0.60 6.20 16 10 N -1.02 -41.96 3.72 -522.97 -1.94 -43.91 16 11 S 2.72 139.34 4.47 -56.49 -0.25 139.09 16 12 O -1.02 -54.83 15.64 -128.00 -2.00 -56.83 16 13 O -1.02 -54.31 16.46 -128.00 -2.11 -56.41 16 14 C -1.04 -60.02 10.29 67.73 0.70 -59.32 16 15 H 0.10 6.13 8.06 -2.91 -0.02 6.11 16 16 C 0.11 6.31 5.47 84.66 0.46 6.77 16 17 N -0.85 -49.81 13.96 21.45 0.30 -49.52 16 18 Si 0.82 41.09 26.54 68.60 1.82 42.91 16 19 H -0.24 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.22 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.23 -11.62 5.61 99.48 0.56 -11.06 16 22 C 0.16 5.58 7.03 85.64 0.60 6.19 16 23 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 24 H 0.12 0.71 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 26 H 0.17 1.89 6.31 -2.91 -0.02 1.87 16 27 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 28 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.29 15.33 8.31 -92.71 -0.77 14.55 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -71.92 293.73 -0.15 -72.07 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.98 Total: 10.64 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 4.03 Total: -50.54 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -1.64 Total: -93.42 kcal Atomic # 8 Polarization: -115.67 SS G_CDS: -5.08 Total: -120.75 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.82 Total: 42.91 kcal Atomic # 16 Polarization: 139.34 SS G_CDS: -0.25 Total: 139.09 kcal Total: -71.92 -0.15 -72.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692915119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.315 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds