Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35762 * 119.62393 * 2 1 4 4 C 1.35354 * 120.70391 * 179.97438 * 3 2 1 5 5 C 1.40197 * 119.94534 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.36415 * 180.02562 * 5 4 3 7 7 O 1.45207 * 109.47022 * 179.97438 * 6 5 4 8 8 C 1.34233 * 116.99867 * 179.97438 * 7 6 5 9 9 O 1.20820 * 120.00039 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99781 * 180.02562 * 8 7 6 11 11 S 1.80997 * 109.46950 * 179.97438 * 10 8 7 12 12 C 1.76200 * 99.99816 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00410 * 0.02562 * 12 11 10 14 14 C 1.38801 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99800 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00263 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47573 * 59.99614 * 16 14 12 18 18 H 1.48500 * 109.47505 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47205 * 299.99543 * 16 14 12 20 20 C 1.36396 * 119.26438 * 359.73962 * 5 4 3 21 21 C 1.34662 * 119.62692 * 179.97438 * 2 1 3 22 22 O 1.22063 * 119.98236 * 0.02562 * 21 2 1 23 23 H 1.08991 * 109.47249 * 270.02321 * 1 2 3 24 24 H 1.09001 * 109.46933 * 30.02667 * 1 2 3 25 25 H 1.09000 * 109.46763 * 150.02264 * 1 2 3 26 26 H 1.07997 * 119.64966 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.02791 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47387 * 299.99549 * 6 5 4 29 29 H 1.09004 * 109.47150 * 59.99979 * 6 5 4 30 30 H 1.08997 * 109.46977 * 300.00051 * 10 8 7 31 31 H 1.09003 * 109.46605 * 59.99999 * 10 8 7 32 32 H 0.96994 * 119.99997 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.34796 * 180.25117 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1802 0.0000 4 6 3.4894 1.2057 0.0005 5 6 4.2120 0.0043 0.0016 6 6 5.7188 0.0217 0.0028 7 8 6.2186 -1.3417 0.0044 8 6 7.5513 -1.5022 0.0050 9 8 8.2762 -0.5356 0.0048 10 6 8.1433 -2.8881 0.0061 11 16 9.9496 -2.7725 0.0060 12 6 10.3656 -4.4847 0.0066 13 1 9.5843 -5.2303 0.0064 14 6 11.6976 -4.8752 0.0072 15 7 12.6499 -3.9665 0.0069 16 14 12.1387 -6.6903 0.0071 17 1 11.5760 -7.3365 -1.2058 18 1 13.6160 -6.8408 0.0072 19 1 11.5748 -7.3369 1.2192 20 6 3.5360 -1.1804 0.0075 21 6 2.1307 -1.1706 0.0005 22 8 1.5132 -2.2235 0.0005 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.5843 2.1085 -0.0004 27 1 4.0121 2.1507 0.0009 28 1 6.0769 0.5392 -0.8872 29 1 6.0755 0.5401 0.8928 30 1 7.8131 -3.4235 0.8962 31 1 7.8138 -3.4245 -0.8838 32 1 13.5807 -4.2394 0.0077 33 1 4.0751 -2.1162 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919082908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -85.007868 kcal Electronic energy + Delta-G solvation = -18637.951787 eV Core-core repulsion = 15369.966380 eV Total energy + Delta-G solvation = -3267.985408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.56897 -40.09750 -37.32172 -36.49986 -34.95501 -32.48298 -30.56995 -29.92637 -28.88191 -26.27233 -25.52942 -23.99766 -21.89074 -20.99571 -18.12953 -17.78249 -17.56933 -16.91585 -16.57459 -16.44221 -16.20118 -15.62866 -14.84134 -14.40099 -14.23913 -14.07650 -14.03717 -13.49198 -13.13279 -12.79764 -12.65364 -12.34763 -12.33941 -11.89384 -11.87904 -11.10071 -11.05463 -10.87881 -10.82442 -10.19865 -10.09477 -9.93035 -9.91468 -9.10373 -8.37731 -8.24881 -6.60900 -6.27169 -4.00063 0.53572 1.54578 2.33933 2.53424 2.59843 3.23027 3.23663 3.27874 3.36184 3.47508 4.14311 4.17579 4.22720 4.42029 4.78937 4.85110 4.90265 5.03730 5.08703 5.11629 5.14012 5.22197 5.24587 5.49825 5.57821 5.77325 5.83401 6.08285 6.11111 6.24716 6.58691 6.78079 7.55766 7.78676 8.09053 8.30623 9.18423 10.80299 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.036720 B = 0.002896 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.349024 B = 9666.423494 C =10403.022214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.504 5.504 3 C 0.129 3.871 4 C -0.219 4.219 5 C 0.005 3.995 6 C 0.099 3.901 7 O -0.357 6.357 8 C 0.483 3.517 9 O -0.487 6.487 10 C -0.129 4.129 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.868 5.868 16 Si 0.922 3.078 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.218 4.218 21 C 0.513 3.487 22 O -0.550 6.550 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.270 0.730 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.383 12.636 -0.076 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.216 5.216 3 C 0.003 3.997 4 C -0.242 4.242 5 C 0.001 3.999 6 C 0.025 3.975 7 O -0.275 6.275 8 C 0.324 3.676 9 O -0.372 6.372 10 C -0.277 4.277 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.748 3.252 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.239 4.239 21 C 0.315 3.685 22 O -0.433 6.433 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.182 0.818 27 H 0.167 0.833 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.760 13.219 -0.078 25.461 hybrid contribution -0.440 -1.905 0.014 1.955 sum -22.200 11.315 -0.064 24.917 Atomic orbital electron populations 1.22142 0.77324 1.04915 1.03847 1.45449 1.09238 1.06945 1.59958 1.21820 0.93394 0.89438 0.95087 1.20344 0.92444 0.98655 1.12766 1.19957 0.94504 0.93521 0.91935 1.21718 0.89375 0.82353 1.04018 1.86499 1.25375 1.30590 1.85069 1.23328 0.79460 0.92590 0.72225 1.90673 1.60606 1.41795 1.44101 1.23318 1.05398 0.92330 1.06681 1.85385 0.89546 1.11313 1.96909 1.22808 0.94988 0.91171 1.59484 0.90574 1.25003 0.95162 0.99031 0.94302 1.69999 1.00306 1.33439 1.46552 0.86171 0.77423 0.82672 0.78952 1.19821 1.20786 1.19816 1.22110 0.92037 1.00533 1.09231 1.17177 0.89224 0.82708 0.79378 1.90965 1.69829 1.29552 1.52909 0.90651 0.89737 0.88799 0.81787 0.83316 0.88809 0.88819 0.87741 0.87743 0.92011 0.82135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.36 59.85 0.62 0.95 16 2 N -0.50 -4.34 2.99 -127.20 -0.38 -4.72 16 3 C 0.13 0.74 10.28 -16.84 -0.17 0.57 16 4 C -0.22 -1.53 9.74 -39.87 -0.39 -1.91 16 5 C 0.00 0.05 5.89 -104.55 -0.62 -0.57 16 6 C 0.10 1.16 5.83 36.00 0.21 1.37 16 7 O -0.36 -5.45 8.72 -39.27 -0.34 -5.79 16 8 C 0.48 8.95 7.98 36.01 0.29 9.24 16 9 O -0.49 -10.21 15.61 -18.75 -0.29 -10.50 16 10 C -0.13 -2.61 6.27 36.01 0.23 -2.39 16 11 S -0.06 -1.53 20.58 -107.50 -2.21 -3.74 16 12 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 13 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 16 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.22 -2.77 9.33 -39.38 -0.37 -3.14 16 21 C 0.51 6.67 7.41 -15.45 -0.11 6.55 16 22 O -0.55 -9.14 16.64 4.86 0.08 -9.06 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.18 8.01 -51.93 -0.42 -0.24 16 25 H 0.09 0.67 7.39 -51.93 -0.38 0.29 16 26 H 0.16 0.22 8.04 -52.49 -0.42 -0.20 16 27 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 28 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 29 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.10 1.96 8.14 -51.91 -0.42 1.54 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.16 2.25 7.01 -52.48 -0.37 1.89 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -36.05 312.00 -6.52 -42.57 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.67 Total: -2.60 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.12 Total: -2.07 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.35 Total: -29.72 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.55 Total: -25.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.05 -6.52 -42.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919082908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.438 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds