Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48503 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47474 * 300.00251 * 3 2 1 6 6 H 1.48505 * 109.47073 * 60.00516 * 3 2 1 7 7 C 1.38799 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99836 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99956 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47297 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99529 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00051 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00006 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47393 * 180.02562 * 14 13 11 16 16 N 1.46498 * 109.47425 * 64.99542 * 15 14 13 17 17 C 1.38405 * 120.00241 * 180.02562 * 16 15 14 18 18 N 1.32494 * 119.21430 * 359.45979 * 17 16 15 19 19 C 1.32277 * 120.73841 * 179.72095 * 18 17 16 20 20 C 1.38608 * 119.19678 * 0.53884 * 19 18 17 21 21 C 1.38606 * 118.55898 * 359.73449 * 20 19 18 22 22 N 1.32279 * 119.19607 * 359.97438 * 21 20 19 23 23 H 0.97000 * 119.99860 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47344 * 59.99825 * 10 9 7 25 25 H 1.09005 * 109.47001 * 300.00047 * 10 9 7 26 26 H 1.09004 * 109.47299 * 59.99863 * 14 13 11 27 27 H 1.09007 * 109.46978 * 300.00169 * 14 13 11 28 28 H 1.09007 * 109.46593 * 304.99797 * 15 14 13 29 29 H 1.09001 * 109.47217 * 184.99778 * 15 14 13 30 30 H 0.97005 * 119.99891 * 359.72855 * 16 15 14 31 31 H 1.08000 * 120.40224 * 180.29765 * 19 18 17 32 32 H 1.07992 * 120.71909 * 179.75623 * 20 19 18 33 33 H 1.07994 * 120.40358 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7956 -5.5015 -0.0011 13 8 2.8407 -6.3388 -0.0018 14 6 2.2610 -7.6701 -0.0030 15 6 3.3800 -8.7136 -0.0029 16 7 4.1345 -8.6205 1.2493 17 6 5.2028 -9.4702 1.4785 18 7 5.5228 -10.3692 0.5593 19 6 6.5413 -11.1925 0.7445 20 6 7.2691 -11.1137 1.9216 21 6 6.9038 -10.1654 2.8642 22 7 5.8781 -9.3685 2.6138 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7314 0.8894 25 1 3.1245 -3.7313 -0.8906 26 1 1.6450 -7.7975 -0.8932 27 1 1.6446 -7.7988 0.8868 28 1 4.0482 -8.5298 -0.8443 29 1 2.9475 -9.7101 -0.0933 30 1 3.8882 -7.9605 1.9161 31 1 6.8003 -11.9201 -0.0104 32 1 8.1028 -11.7764 2.1001 33 1 7.4504 -10.0777 3.7915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105547083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -29.314255 kcal Electronic energy + Delta-G solvation = -18359.698770 eV Core-core repulsion = 15126.421170 eV Total energy + Delta-G solvation = -3233.277600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09020 -40.11001 -37.00896 -35.66706 -33.84928 -32.50220 -31.87732 -29.97903 -28.62762 -25.58402 -24.92483 -23.72397 -22.53463 -21.02314 -18.53640 -17.96755 -17.74180 -17.22215 -16.42554 -15.98424 -15.74065 -15.48262 -14.86286 -14.78308 -14.67625 -14.27287 -13.72912 -13.63365 -13.27550 -12.89842 -12.61869 -12.07637 -11.84586 -11.21353 -11.10766 -11.09602 -11.05879 -10.83030 -10.74695 -10.56836 -10.07169 -9.90789 -9.34030 -9.13988 -8.38203 -8.33884 -6.62595 -6.29224 -4.01991 0.94390 0.97389 2.52719 2.59229 2.66717 3.18772 3.22740 3.28405 3.48205 3.70204 3.95247 4.13022 4.39445 4.51230 4.56624 4.89564 4.97483 4.98858 4.99913 5.06857 5.19273 5.36055 5.51282 5.53080 5.65464 5.74979 6.00375 6.05610 6.53581 6.59513 6.84750 7.22561 7.54205 8.09358 8.10806 8.28969 9.16573 10.78333 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.002696 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.707694 B =10383.220806 C =11034.583142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.480 3.520 12 O -0.487 6.487 13 O -0.360 6.360 14 C 0.050 3.950 15 C 0.142 3.858 16 N -0.693 5.693 17 C 0.566 3.434 18 N -0.571 5.571 19 C 0.192 3.808 20 C -0.300 4.300 21 C 0.193 3.807 22 N -0.571 5.571 23 H 0.269 0.731 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.419 0.581 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 -21.938 2.205 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.167 5.833 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.372 6.372 13 O -0.278 6.278 14 C -0.024 4.024 15 C 0.018 3.982 16 N -0.330 5.330 17 C 0.209 3.791 18 N -0.294 5.294 19 C 0.024 3.976 20 C -0.326 4.326 21 C 0.025 3.975 22 N -0.294 5.294 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.257 0.743 31 H 0.183 0.817 32 H 0.160 0.840 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.382 -21.502 1.843 23.948 hybrid contribution 2.468 0.834 0.417 2.638 sum 12.850 -20.668 2.260 24.442 Atomic orbital electron populations 1.70020 1.05986 1.27552 1.46673 1.25012 0.95077 0.99149 0.94324 0.86062 0.79618 0.81559 0.77950 1.19495 1.20492 1.20493 1.22879 0.95052 0.91112 1.59288 0.90531 1.85411 1.04323 0.96637 1.96886 1.23302 1.07005 0.90857 1.06511 1.23321 0.85164 0.87068 0.72315 1.90678 1.16885 1.85617 1.44028 1.86561 1.41207 1.15073 1.85000 1.23280 0.95600 0.79484 1.04071 1.21410 0.92772 0.97644 0.86393 1.44155 1.30223 1.37212 1.21404 1.19334 0.87279 0.87087 0.85421 1.67938 1.20223 1.08688 1.32580 1.22924 0.87213 0.92544 0.94908 1.22510 1.06267 1.05543 0.98230 1.22928 0.89409 0.87273 0.97857 1.67926 1.10878 1.29413 1.21149 0.92107 0.87897 0.87901 0.89120 0.90414 0.90164 0.89256 0.74340 0.81737 0.84016 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.13 -2.59 6.27 36.00 0.23 -2.37 16 11 C 0.48 8.90 7.97 36.00 0.29 9.18 16 12 O -0.49 -10.33 15.61 -18.75 -0.29 -10.63 16 13 O -0.36 -5.36 10.17 -39.24 -0.40 -5.76 16 14 C 0.05 0.57 5.60 37.16 0.21 0.78 16 15 C 0.14 1.39 6.04 -4.04 -0.02 1.37 16 16 N -0.69 -7.78 5.66 -62.31 -0.35 -8.13 16 17 C 0.57 6.80 8.43 -322.81 -2.72 4.08 16 18 N -0.57 -6.28 9.59 -13.93 -0.13 -6.41 16 19 C 0.19 1.53 11.30 -17.22 -0.19 1.34 16 20 C -0.30 -2.05 10.16 -39.31 -0.40 -2.45 16 21 C 0.19 1.63 11.30 -17.22 -0.19 1.43 16 22 N -0.57 -6.68 10.46 -13.93 -0.15 -6.83 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 25 H 0.10 1.93 8.14 -51.91 -0.42 1.51 16 26 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.08 0.87 8.13 -51.92 -0.42 0.45 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.42 4.71 8.59 -40.82 -0.35 4.36 16 31 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -34.37 315.93 -9.38 -43.74 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.70 Total: 1.21 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.61 Total: 0.65 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.10 Total: -46.34 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.69 Total: -16.39 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.37 -9.38 -43.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105547083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.429 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds