Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48503 * 109.46888 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47474 * 300.00251 * 3 2 1 6 6 H 1.48505 * 109.47073 * 60.00516 * 3 2 1 7 7 C 1.38799 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99836 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99956 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47297 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99529 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00051 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00006 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47393 * 180.02562 * 14 13 11 16 16 N 1.46498 * 109.47425 * 64.99542 * 15 14 13 17 17 C 1.38405 * 120.00241 * 180.02562 * 16 15 14 18 18 N 1.32494 * 119.21430 * 359.45979 * 17 16 15 19 19 C 1.32277 * 120.73841 * 179.72095 * 18 17 16 20 20 C 1.38608 * 119.19678 * 0.53884 * 19 18 17 21 21 C 1.38606 * 118.55898 * 359.73449 * 20 19 18 22 22 N 1.32279 * 119.19607 * 359.97438 * 21 20 19 23 23 H 0.97000 * 119.99860 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47344 * 59.99825 * 10 9 7 25 25 H 1.09005 * 109.47001 * 300.00047 * 10 9 7 26 26 H 1.09004 * 109.47299 * 59.99863 * 14 13 11 27 27 H 1.09007 * 109.46978 * 300.00169 * 14 13 11 28 28 H 1.09007 * 109.46593 * 304.99797 * 15 14 13 29 29 H 1.09001 * 109.47217 * 184.99778 * 15 14 13 30 30 H 0.97005 * 119.99891 * 359.72855 * 16 15 14 31 31 H 1.08000 * 120.40224 * 180.29765 * 19 18 17 32 32 H 1.07992 * 120.71909 * 179.75623 * 20 19 18 33 33 H 1.07994 * 120.40358 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7956 -5.5015 -0.0011 13 8 2.8407 -6.3388 -0.0018 14 6 2.2610 -7.6701 -0.0030 15 6 3.3800 -8.7136 -0.0029 16 7 4.1345 -8.6205 1.2493 17 6 5.2028 -9.4702 1.4785 18 7 5.5228 -10.3692 0.5593 19 6 6.5413 -11.1925 0.7445 20 6 7.2691 -11.1137 1.9216 21 6 6.9038 -10.1654 2.8642 22 7 5.8781 -9.3685 2.6138 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7314 0.8894 25 1 3.1245 -3.7313 -0.8906 26 1 1.6450 -7.7975 -0.8932 27 1 1.6446 -7.7988 0.8868 28 1 4.0482 -8.5298 -0.8443 29 1 2.9475 -9.7101 -0.0933 30 1 3.8882 -7.9605 1.9161 31 1 6.8003 -11.9201 -0.0104 32 1 8.1028 -11.7764 2.1001 33 1 7.4504 -10.0777 3.7915 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105547083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -50.834544 kcal Electronic energy + Delta-G solvation = -18360.631960 eV Core-core repulsion = 15126.421170 eV Total energy + Delta-G solvation = -3234.210790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.79649 -41.47568 -38.12966 -36.71914 -34.62123 -34.53878 -32.71803 -31.35160 -29.60589 -27.71705 -25.60809 -24.51113 -23.43034 -22.34023 -19.94111 -19.22820 -18.78628 -18.42068 -17.63394 -17.17661 -16.90261 -16.49050 -16.35056 -16.05492 -15.73695 -15.36888 -14.83995 -14.64093 -14.40503 -14.19785 -13.93681 -13.51561 -13.20537 -12.92855 -12.86524 -12.63373 -11.91358 -11.78510 -11.77738 -11.75977 -11.64125 -11.34825 -11.18430 -10.38947 -10.04155 -9.06067 -8.74396 -8.38745 -6.18179 0.31472 0.32001 1.00048 1.10945 1.40288 1.41326 1.55395 1.82741 1.92908 2.22702 2.96420 3.01771 3.24061 3.32654 3.61212 3.79167 3.86096 3.95370 4.02183 4.16485 4.30836 4.43472 4.44753 4.53351 4.63283 4.73382 4.96203 5.22989 5.40463 5.43697 5.83892 6.13350 6.17318 6.49151 6.66616 7.03328 7.38527 8.70698 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.002696 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.707694 B =10383.220806 C =11034.583142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.136 6.136 10 C -0.110 4.110 11 C 0.491 3.509 12 O -0.518 6.518 13 O -0.351 6.351 14 C 0.049 3.951 15 C 0.155 3.845 16 N -0.702 5.702 17 C 0.543 3.457 18 N -0.590 5.590 19 C 0.179 3.821 20 C -0.284 4.284 21 C 0.177 3.823 22 N -0.602 5.602 23 H 0.273 0.727 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.198 0.802 32 H 0.178 0.822 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.474 -23.004 2.211 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.091 5.909 10 C -0.258 4.258 11 C 0.334 3.666 12 O -0.406 6.406 13 O -0.268 6.268 14 C -0.025 4.025 15 C 0.031 3.969 16 N -0.340 5.340 17 C 0.186 3.814 18 N -0.314 5.314 19 C 0.012 3.988 20 C -0.309 4.309 21 C 0.011 3.989 22 N -0.326 5.326 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.252 0.748 31 H 0.215 0.785 32 H 0.195 0.805 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.937 -22.619 1.851 26.123 hybrid contribution 1.811 0.932 0.440 2.083 sum 14.747 -21.687 2.291 26.326 Atomic orbital electron populations 1.70166 1.07889 1.28740 1.47768 1.26117 0.96001 1.03275 0.93566 0.84885 0.78566 0.76236 0.78144 1.18153 1.19825 1.19868 1.23216 0.95460 0.91629 1.59207 0.89733 1.85495 1.09200 0.99057 1.97157 1.23088 1.04243 0.90379 1.08133 1.22887 0.84736 0.87318 0.71705 1.90673 1.18189 1.86073 1.45693 1.86526 1.40328 1.15854 1.84124 1.23576 0.96461 0.77638 1.04787 1.21343 0.92015 0.97573 0.85959 1.44193 1.30685 1.37486 1.21595 1.19534 0.87873 0.87873 0.86110 1.67963 1.21571 1.09223 1.32669 1.23610 0.86472 0.92443 0.96230 1.22902 1.06288 1.04757 0.96981 1.23551 0.88864 0.87148 0.99387 1.67926 1.12224 1.30923 1.21478 0.91828 0.86240 0.86183 0.88089 0.90111 0.90552 0.87566 0.74832 0.78531 0.80466 0.78991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.78 13.22 21.65 0.29 -54.50 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.55 -30.75 9.50 67.95 0.65 -30.10 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.14 -7.35 20.57 -56.49 -1.16 -8.51 16 10 C -0.11 -4.38 6.27 71.24 0.45 -3.93 16 11 C 0.49 18.02 7.97 71.24 0.57 18.58 16 12 O -0.52 -22.18 15.61 21.96 0.34 -21.84 16 13 O -0.35 -10.11 10.17 -51.35 -0.52 -10.64 16 14 C 0.05 1.08 5.60 71.98 0.40 1.48 16 15 C 0.15 2.89 6.04 86.38 0.52 3.42 16 16 N -0.70 -15.48 5.66 -351.04 -1.99 -17.47 16 17 C 0.54 12.72 8.43 261.49 2.20 14.92 16 18 N -0.59 -12.21 9.59 -197.98 -1.90 -14.11 16 19 C 0.18 2.42 11.30 84.71 0.96 3.38 16 20 C -0.28 -3.08 10.16 22.45 0.23 -2.85 16 21 C 0.18 2.65 11.30 84.71 0.96 3.60 16 22 N -0.60 -13.68 10.46 -197.99 -2.07 -15.75 16 23 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.12 4.36 8.14 -2.40 -0.02 4.34 16 25 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 26 H 0.10 2.04 8.13 -2.39 -0.02 2.03 16 27 H 0.08 1.76 8.13 -2.38 -0.02 1.74 16 28 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.41 9.36 8.59 -92.70 -0.80 8.56 16 31 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -75.60 315.93 2.76 -72.85 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.34 Total: 14.99 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 7.40 Total: 9.85 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.67 Total: -101.82 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.18 Total: -32.48 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.16 Total: -8.51 kcal Total: -75.60 2.76 -72.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105547083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.012 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds