Wall clock time and date at job start Wed Apr 15 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99785 * 2 1 4 4 O 1.20824 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99738 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.46791 * 180.02562 * 5 3 2 7 7 C 1.37096 * 120.00279 * 270.00309 * 6 5 3 8 8 H 1.08003 * 120.00272 * 203.00230 * 7 6 5 9 9 C 1.38954 * 119.99921 * 23.00176 * 7 6 5 10 10 N 1.31408 * 119.99935 * 351.24982 * 9 7 6 11 11 Si 1.86804 * 120.00055 * 171.25890 * 9 7 6 12 12 H 1.48499 * 109.47151 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.46928 * 119.99882 * 11 9 7 14 14 H 1.48500 * 109.46633 * 239.99477 * 11 9 7 15 15 C 1.34778 * 120.00040 * 90.00963 * 6 5 3 16 16 O 1.21298 * 119.99553 * 5.01089 * 15 6 5 17 17 C 1.50692 * 120.00415 * 185.01589 * 15 6 5 18 18 C 1.50700 * 109.47540 * 174.77675 * 17 15 6 19 19 C 1.38421 * 122.53495 * 89.99630 * 18 17 15 20 20 C 1.33389 * 114.91636 * 179.97438 * 19 18 17 21 21 S 1.75881 * 109.59571 * 0.02562 * 20 19 18 22 22 C 1.33389 * 122.54017 * 269.97826 * 18 17 15 23 23 H 1.09007 * 109.47337 * 299.99596 * 1 2 3 24 24 H 1.08995 * 109.47400 * 59.99352 * 1 2 3 25 25 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46759 * 60.00915 * 5 3 2 27 27 H 1.08997 * 109.47725 * 300.00449 * 5 3 2 28 28 H 0.97000 * 120.00235 * 185.00608 * 10 9 7 29 29 H 1.09002 * 109.46987 * 54.77484 * 17 15 6 30 30 H 1.09001 * 109.47141 * 294.78241 * 17 15 6 31 31 H 1.07998 * 122.54295 * 359.71408 * 19 18 17 32 32 H 1.08008 * 125.20126 * 179.97438 * 20 19 18 33 33 H 1.07999 * 125.20238 * 0.05667 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1763 3.3375 -1.1859 8 1 4.8148 4.2079 -1.2227 9 6 3.5523 2.8844 -2.3418 10 7 2.9174 1.7339 -2.3378 11 14 3.6162 3.9105 -3.9015 12 1 4.3863 5.1540 -3.6447 13 1 4.2773 3.1320 -4.9794 14 1 2.2353 4.2614 -4.3199 15 6 4.1724 3.3257 1.1685 16 8 4.0892 2.7211 2.2167 17 6 4.4889 4.7990 1.1716 18 6 4.5278 5.3016 2.5918 19 6 5.6866 5.3048 3.3489 20 6 5.5481 5.7834 4.5863 21 16 3.8773 6.2662 4.8484 22 6 3.4483 5.7773 3.2143 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.9563 0.7807 -0.8893 27 1 3.9558 0.7809 0.8907 28 1 2.5442 1.3829 -3.1615 29 1 3.7203 5.3369 0.6167 30 1 5.4585 4.9633 0.7013 31 1 6.6303 4.9432 2.9681 32 1 6.3406 5.8615 5.3159 33 1 2.4615 5.8503 2.7815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120673102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:36 Heat of formation + Delta-G solvation = -88.143542 kcal Electronic energy + Delta-G solvation = -20367.275101 eV Core-core repulsion = 17099.153721 eV Total energy + Delta-G solvation = -3268.121381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.36265 -40.36854 -38.67523 -37.22314 -36.44725 -33.46022 -32.23160 -30.34567 -28.78742 -27.73147 -26.39390 -24.03790 -22.16363 -21.15886 -19.80189 -18.98203 -18.45640 -18.19645 -18.00911 -17.26670 -16.95193 -16.33046 -16.07232 -15.85450 -15.37291 -14.70509 -14.25075 -14.22517 -13.87090 -13.62765 -13.56134 -13.25441 -13.03597 -12.95837 -12.86144 -12.66058 -12.42941 -12.38206 -12.03626 -11.66798 -11.58333 -11.46265 -10.93295 -10.53965 -9.87819 -9.62874 -9.18603 -8.32230 -6.00432 0.16095 0.83364 1.10902 1.39558 1.47871 1.59651 1.68082 1.79143 1.90355 2.23669 2.35625 3.03217 3.15528 4.05538 4.13092 4.26711 4.33944 4.38345 4.39353 4.48087 4.59226 4.65868 4.72022 4.75475 4.85160 4.99154 5.18553 5.42508 5.54759 5.64383 5.65885 5.77136 6.34968 7.07819 7.22591 7.48949 7.88795 8.69511 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.005878 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.133666 B = 4762.614792 C = 5815.166448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.152 3.848 6 N -0.447 5.447 7 C -0.340 4.340 8 H 0.120 0.880 9 C -0.003 4.003 10 N -0.908 5.908 11 Si 0.996 3.004 12 H -0.250 1.250 13 H -0.274 1.274 14 H -0.295 1.295 15 C 0.466 3.534 16 O -0.623 6.623 17 C -0.057 4.057 18 C -0.086 4.086 19 C -0.136 4.136 20 C -0.208 4.208 21 S 0.103 5.897 22 C -0.228 4.228 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.078 0.922 28 H 0.271 0.729 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.194 0.806 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 4.174 5.304 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.027 3.973 6 N -0.166 5.166 7 C -0.467 4.467 8 H 0.138 0.862 9 C -0.203 4.203 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.174 1.174 13 H -0.200 1.200 14 H -0.221 1.221 15 C 0.257 3.743 16 O -0.511 6.511 17 C -0.099 4.099 18 C -0.099 4.099 19 C -0.166 4.166 20 C -0.343 4.343 21 S 0.366 5.634 22 C -0.363 4.363 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.166 0.834 32 H 0.211 0.789 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.309 4.717 6.918 8.475 hybrid contribution 0.037 -0.514 -2.292 2.349 sum 1.347 4.203 4.626 6.394 Atomic orbital electron populations 1.23278 0.76389 1.04823 1.01058 1.86432 1.23935 1.33906 1.84979 1.24091 0.92677 0.80630 0.69018 1.90458 1.67520 1.37698 1.48236 1.20636 0.86850 0.86118 1.03739 1.43585 1.58441 1.08622 1.05953 1.20152 1.28011 1.13484 0.85048 0.86221 1.26146 0.93916 0.97115 1.03084 1.69707 1.37116 1.19083 1.28932 0.84811 0.77359 0.78908 0.76923 1.17362 1.19973 1.22132 1.20833 0.80710 0.90141 0.82640 1.90517 1.58525 1.69561 1.32468 1.20101 1.04731 0.91483 0.93552 1.18712 0.93757 1.00387 0.97036 1.20190 0.99427 1.02539 0.94469 1.25856 0.99918 1.07632 1.00844 1.83735 1.04417 1.63420 1.11822 1.25528 1.02562 1.09427 0.98793 0.93178 0.93729 0.84826 0.84816 0.90369 0.91859 0.88815 0.87084 0.83380 0.78903 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 10.56 113.37 1.20 2.51 16 2 O -0.38 -16.56 10.57 -51.45 -0.54 -17.10 16 3 C 0.49 25.10 5.92 71.24 0.42 25.52 16 4 O -0.55 -31.16 15.94 21.97 0.35 -30.81 16 5 C 0.15 7.55 5.29 85.63 0.45 8.01 16 6 N -0.45 -22.46 2.11 -639.59 -1.35 -23.81 16 7 C -0.34 -16.54 9.00 84.04 0.76 -15.78 16 8 H 0.12 5.25 6.72 -2.91 -0.02 5.23 16 9 C 0.00 -0.12 5.41 84.93 0.46 0.34 16 10 N -0.91 -46.40 8.21 21.66 0.18 -46.22 16 11 Si 1.00 39.06 29.57 68.60 2.03 41.09 16 12 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 13 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.47 22.60 7.61 87.65 0.67 23.27 16 16 O -0.62 -33.28 15.60 -3.08 -0.05 -33.33 16 17 C -0.06 -2.22 4.50 29.10 0.13 -2.09 16 18 C -0.09 -3.11 4.30 -20.92 -0.09 -3.20 16 19 C -0.14 -4.22 9.98 21.22 0.21 -4.01 16 20 C -0.21 -5.41 11.23 66.72 0.75 -4.66 16 21 S 0.10 2.81 23.34 -56.49 -1.32 1.49 16 22 C -0.23 -7.84 10.98 66.72 0.73 -7.11 16 23 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 24 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.13 6.67 6.28 -2.39 -0.01 6.66 16 27 H 0.08 3.76 7.36 -2.39 -0.02 3.74 16 28 H 0.27 13.33 8.32 -92.71 -0.77 12.56 16 29 H 0.09 3.67 8.01 -2.39 -0.02 3.65 16 30 H 0.11 3.79 7.73 -2.39 -0.02 3.77 16 31 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.15 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -66.45 304.43 6.11 -60.33 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.13 Total: 25.56 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 5.69 Total: 22.81 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.17 Total: -70.04 kcal Atomic # 8 Polarization: -81.01 SS G_CDS: -0.24 Total: -81.25 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.32 Total: 1.49 kcal Total: -66.45 6.11 -60.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120673102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.809 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds