Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 120.00309 * 2 1 4 4 H 1.48497 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46796 * 300.00643 * 3 2 1 6 6 H 1.48502 * 109.46609 * 60.00267 * 3 2 1 7 7 C 1.38950 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00002 * 179.97438 * 7 2 1 9 9 N 1.37089 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00393 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99679 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00682 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47526 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00151 * 179.97438 * 13 12 10 15 15 O 1.21589 * 119.99652 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00164 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99874 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46724 * 180.02562 * 17 16 14 19 19 C 1.38425 * 122.53762 * 90.00099 * 18 17 16 20 20 C 1.33390 * 114.92123 * 179.97438 * 19 18 17 21 21 S 1.75891 * 109.59251 * 0.02562 * 20 19 18 22 22 C 1.33383 * 122.54063 * 269.97373 * 18 17 16 23 23 H 0.97000 * 119.99613 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00274 * 0.02562 * 9 7 2 25 25 H 1.09006 * 109.46768 * 59.99672 * 12 10 9 26 26 H 1.09006 * 109.46584 * 300.00303 * 12 10 9 27 27 H 0.97000 * 119.99924 * 359.97438 * 13 12 10 28 28 H 0.97000 * 119.99911 * 0.02562 * 16 14 13 29 29 H 1.08999 * 109.47237 * 60.00275 * 17 16 14 30 30 H 1.09003 * 109.47393 * 299.99862 * 17 16 14 31 31 H 1.07997 * 122.54292 * 359.71157 * 19 18 17 32 32 H 1.08003 * 125.20243 * 179.97438 * 20 19 18 33 33 H 1.08000 * 125.20529 * 0.06732 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8895 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1956 -5.9765 -0.0016 14 6 1.7463 -7.2472 -0.0017 15 8 0.5509 -7.4693 -0.0018 16 7 2.6221 -8.2716 -0.0026 17 6 2.1337 -9.6528 -0.0033 18 6 3.3058 -10.6000 -0.0037 19 6 3.8849 -11.0685 1.1631 20 6 4.9129 -11.8999 0.9859 21 16 5.1969 -12.1283 -0.7348 22 6 3.8635 -11.0509 -1.1283 23 1 -0.4849 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6173 -4.9204 -0.8914 26 1 0.6166 -4.9208 0.8887 27 1 3.1493 -5.7993 -0.0019 28 1 3.5758 -8.0944 -0.0029 29 1 1.5278 -9.8235 -0.8931 30 1 1.5285 -9.8246 0.8869 31 1 3.5338 -10.7794 2.1426 32 1 5.4840 -12.3614 1.7779 33 1 3.5458 -10.7929 -2.1278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344141866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -57.176808 kcal Electronic energy + Delta-G solvation = -18578.096668 eV Core-core repulsion = 15343.610856 eV Total energy + Delta-G solvation = -3234.485811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23510 -40.09001 -39.13602 -36.24577 -35.37936 -35.24674 -33.36005 -31.07296 -29.34199 -27.50955 -26.13402 -23.77762 -21.98759 -21.35448 -20.17961 -20.02730 -19.36833 -18.54802 -17.47520 -17.37400 -16.89751 -16.49580 -16.16195 -15.90733 -15.71217 -15.16511 -15.07399 -14.38552 -13.96907 -13.90999 -13.73569 -13.57795 -13.54028 -13.01239 -12.95400 -12.87726 -12.43613 -12.10604 -11.70004 -11.57058 -11.47313 -10.54483 -10.42941 -10.09278 -9.82255 -9.76560 -9.38561 -8.50255 -6.00287 0.02554 0.72654 1.04215 1.35918 1.37709 1.44245 1.58003 1.90893 1.98173 2.12830 2.30583 3.09216 3.17133 3.41062 3.84631 4.04555 4.22936 4.34014 4.45417 4.48532 4.55868 4.66334 4.77553 5.09078 5.32236 5.39337 5.40174 5.46432 5.50325 5.92222 5.96402 6.49293 7.02916 7.04666 7.43844 7.53808 7.95826 8.66971 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041796 B = 0.002498 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.754534 B =11206.925403 C =11620.319496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.631 6.631 16 N -0.728 5.728 17 C 0.203 3.797 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.214 4.214 21 S 0.117 5.883 22 C -0.196 4.196 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.410 0.590 28 H 0.408 0.592 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.186 0.814 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -22.622 0.043 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.513 6.513 16 N -0.384 5.384 17 C 0.078 3.922 18 C -0.143 4.143 19 C -0.166 4.166 20 C -0.349 4.349 21 S 0.380 5.620 22 C -0.333 4.333 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.247 0.753 28 H 0.244 0.756 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.203 0.797 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.190 -23.520 -0.803 24.919 hybrid contribution -0.510 1.880 0.816 2.111 sum 7.680 -21.641 0.013 22.963 Atomic orbital electron populations 1.69688 1.07006 1.29554 1.49421 1.26134 0.96542 1.02689 0.95848 0.84810 0.78128 0.76734 0.78291 1.19423 1.19659 1.19645 1.19765 0.92939 0.83533 1.50243 0.89596 1.41842 1.09616 1.04594 1.63503 1.20433 0.88110 0.85919 0.83419 1.90470 1.15201 1.87572 1.57991 1.20589 0.90989 0.83004 1.04110 1.44690 1.10999 1.03264 1.79232 1.15922 0.85080 0.80729 0.77761 1.90887 1.15592 1.84701 1.60121 1.45018 1.09254 1.04470 1.79706 1.19695 0.92803 0.76956 1.02784 1.18876 1.00233 1.02163 0.93054 1.20247 0.97294 0.99364 0.99652 1.25926 1.03573 1.05748 0.99626 1.84343 1.31164 1.45533 1.00916 1.25861 1.01000 1.03396 1.03022 0.91084 0.76674 0.88991 0.88979 0.75265 0.75615 0.91067 0.91004 0.83308 0.79723 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.76 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.75 29.55 68.60 2.03 43.77 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.34 -18.48 9.68 84.04 0.81 -17.67 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.15 5.29 -306.98 -1.62 -29.78 16 10 C 0.43 20.05 7.85 87.66 0.69 20.73 16 11 O -0.62 -32.20 15.24 -3.09 -0.05 -32.25 16 12 C 0.14 5.22 6.15 85.63 0.53 5.75 16 13 N -0.72 -23.96 5.53 -482.29 -2.67 -26.63 16 14 C 0.71 22.36 8.57 179.05 1.53 23.89 16 15 O -0.63 -24.29 16.34 -4.00 -0.07 -24.36 16 16 N -0.73 -16.87 5.55 -482.30 -2.68 -19.54 16 17 C 0.20 4.09 5.92 85.63 0.51 4.60 16 18 C -0.13 -2.12 5.17 -20.92 -0.11 -2.22 16 19 C -0.14 -1.99 9.98 21.22 0.21 -1.78 16 20 C -0.21 -2.64 11.23 66.72 0.75 -1.89 16 21 S 0.12 1.46 23.34 -56.49 -1.32 0.14 16 22 C -0.20 -2.86 10.98 66.72 0.73 -2.13 16 23 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 24 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 25 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 26 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 27 H 0.41 13.22 7.45 -92.71 -0.69 12.52 16 28 H 0.41 7.89 8.48 -92.71 -0.79 7.11 16 29 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -66.85 312.25 -0.99 -67.85 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -1.03 Total: 40.12 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 6.12 Total: 29.15 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -6.69 Total: -124.43 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.14 kcal Total: -66.85 -0.99 -67.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344141866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.668 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds