Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 110.54499 * 2 1 4 4 O 1.42101 * 110.54077 * 223.25419 * 2 1 3 5 5 C 1.76201 * 104.45013 * 111.62671 * 2 1 3 6 6 C 1.37979 * 120.07330 * 115.00120 * 5 2 1 7 7 C 1.38333 * 120.14317 * 180.29806 * 6 5 2 8 8 C 1.38384 * 120.29484 * 359.44604 * 7 6 5 9 9 C 1.37944 * 120.14024 * 0.55081 * 8 7 6 10 10 C 1.39558 * 120.07151 * 295.02060 * 5 2 1 11 11 C 1.47846 * 120.14497 * 359.95499 * 10 5 2 12 12 O 1.21549 * 120.00076 * 359.97438 * 11 10 5 13 13 N 1.34783 * 119.99584 * 179.97438 * 11 10 5 14 14 C 1.46505 * 119.99616 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.46883 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00198 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99921 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47222 * 59.99609 * 19 17 15 21 21 H 1.48501 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46878 * 299.99637 * 19 17 15 23 23 H 1.09001 * 109.46794 * 308.37404 * 1 2 3 24 24 H 1.09004 * 109.47219 * 68.36911 * 1 2 3 25 25 H 1.08990 * 109.47102 * 188.37495 * 1 2 3 26 26 H 1.08002 * 119.92518 * 0.02562 * 6 5 2 27 27 H 1.08003 * 119.85318 * 179.69885 * 7 6 5 28 28 H 1.08000 * 119.93041 * 180.27617 * 8 7 6 29 29 H 1.07996 * 120.07038 * 179.75028 * 9 8 7 30 30 H 0.96995 * 119.99949 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47351 * 300.00409 * 14 13 11 32 32 H 1.09005 * 109.46786 * 60.00226 * 14 13 11 33 33 H 0.97003 * 119.99969 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5862 6 6 2.9149 -1.8352 1.6927 7 6 3.2553 -2.3332 2.9375 8 6 2.9459 -1.6209 4.0829 9 6 2.2851 -0.4136 3.9903 10 6 1.9335 0.0919 2.7375 11 6 1.2256 1.3855 2.6308 12 8 0.9216 1.8236 1.5385 13 7 0.9175 2.0789 3.7447 14 6 0.2165 3.3610 3.6390 15 6 -0.0060 3.9270 5.0177 16 1 0.3406 3.3861 5.8859 17 6 -0.6519 5.1355 5.1708 18 7 -1.0734 5.7944 4.1136 19 14 -0.9270 5.8376 6.8799 20 1 0.3836 6.0441 7.5471 21 1 -1.6376 7.1371 6.7727 22 1 -1.7451 4.8898 7.6785 23 1 -0.3633 0.6380 0.8057 24 1 -0.3634 0.3788 -0.9553 25 1 -0.3633 -1.0166 0.1497 26 1 3.1633 -2.3939 0.8024 27 1 3.7685 -3.2803 3.0157 28 1 3.2184 -2.0131 5.0515 29 1 2.0406 0.1395 4.8851 30 1 1.1605 1.7294 4.6163 31 1 0.8177 4.0567 3.0536 32 1 -0.7451 3.2099 3.1483 33 1 -1.5275 6.6448 4.2213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344454629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -91.152158 kcal Electronic energy + Delta-G solvation = -20168.404590 eV Core-core repulsion = 16900.152746 eV Total energy + Delta-G solvation = -3268.251844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37975 -39.41409 -37.89550 -36.82290 -36.29897 -34.51947 -32.50654 -32.27628 -30.25003 -29.24928 -25.70936 -24.24426 -23.90779 -21.65548 -20.24969 -19.49957 -18.47092 -17.70509 -17.28195 -16.96716 -16.80091 -16.56123 -16.43711 -15.94161 -15.56976 -15.41244 -14.54277 -14.39754 -14.05633 -13.98672 -13.87492 -13.39577 -13.27386 -12.99660 -12.95425 -12.79574 -12.63641 -12.60442 -12.23218 -11.96077 -11.58565 -11.50145 -10.91401 -10.78800 -10.42666 -10.17722 -9.82061 -8.28820 -6.45639 -0.77817 -0.48146 0.03786 1.44038 1.47850 1.55991 1.75474 1.98806 2.21740 2.44604 2.56857 2.97183 3.06602 3.36994 3.65194 3.76172 3.97564 4.07962 4.18749 4.31116 4.45618 4.50349 4.76774 4.95031 4.97195 5.11896 5.14878 5.24184 5.27604 5.42688 5.62415 5.75697 5.82439 6.61486 6.71138 7.17278 7.31981 8.82970 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.004918 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.314055 B = 5692.157446 C = 6634.697103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.512 3.488 3 O -0.966 6.966 4 O -0.977 6.977 5 C -0.626 4.626 6 C -0.041 4.041 7 C -0.107 4.107 8 C -0.064 4.064 9 C -0.108 4.108 10 C -0.062 4.062 11 C 0.509 3.491 12 O -0.555 6.555 13 N -0.689 5.689 14 C 0.264 3.736 15 C -0.559 4.559 16 H 0.085 0.915 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.260 1.260 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.153 0.847 30 H 0.409 0.591 31 H -0.009 1.009 32 H 0.001 0.999 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -19.849 1.451 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.695 3.305 3 O -0.963 6.963 4 O -0.975 6.975 5 C -0.714 4.714 6 C -0.060 4.060 7 C -0.126 4.126 8 C -0.082 4.082 9 C -0.128 4.128 10 C -0.066 4.066 11 C 0.296 3.704 12 O -0.438 6.438 13 N -0.339 5.339 14 C 0.142 3.858 15 C -0.596 4.596 16 H 0.103 0.897 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.184 1.184 23 H 0.149 0.851 24 H 0.159 0.841 25 H 0.170 0.830 26 H 0.180 0.820 27 H 0.196 0.804 28 H 0.197 0.803 29 H 0.170 0.830 30 H 0.246 0.754 31 H 0.009 0.991 32 H 0.019 0.981 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.119 -19.081 0.013 20.038 hybrid contribution -0.696 0.763 1.328 1.682 sum 5.423 -18.318 1.340 19.151 Atomic orbital electron populations 1.30221 1.22361 1.12742 1.13136 1.04455 0.79171 0.73178 0.73712 1.93591 1.78947 1.37893 1.85898 1.93479 1.79437 1.62624 1.61923 1.30596 1.14116 1.06920 1.19725 1.21341 0.92049 0.91493 1.01097 1.22010 0.98053 1.01426 0.91082 1.21925 0.92792 0.92179 1.01261 1.21814 0.97553 0.97524 0.95860 1.19587 0.98960 0.92735 0.95294 1.19134 0.80489 0.85652 0.85077 1.90777 1.55257 1.71110 1.26664 1.46033 1.56986 1.22399 1.08468 1.18692 0.90390 0.79544 0.97222 1.21563 1.39403 1.06385 0.92277 0.89661 1.26031 0.94477 0.96856 1.02027 1.70128 1.38878 1.15811 1.31935 0.85219 0.78825 0.77384 0.77858 1.18849 1.21255 1.18433 0.85128 0.84053 0.82962 0.82048 0.80415 0.80308 0.82987 0.75389 0.99110 0.98062 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -16.85 10.14 113.37 1.15 -15.70 16 2 S 2.51 81.18 5.14 -56.49 -0.29 80.89 16 3 O -0.97 -42.49 14.84 -118.13 -1.75 -44.24 16 4 O -0.98 -31.61 16.74 -127.65 -2.14 -33.74 16 5 C -0.63 -17.88 5.61 22.53 0.13 -17.76 16 6 C -0.04 -0.86 9.49 22.23 0.21 -0.65 16 7 C -0.11 -1.50 10.04 22.33 0.22 -1.28 16 8 C -0.06 -0.91 10.03 22.23 0.22 -0.68 16 9 C -0.11 -2.35 9.54 22.53 0.21 -2.13 16 10 C -0.06 -1.90 5.86 -20.09 -0.12 -2.02 16 11 C 0.51 20.64 7.35 86.79 0.64 21.28 16 12 O -0.56 -26.04 9.07 20.15 0.18 -25.86 16 13 N -0.69 -28.70 5.50 -469.70 -2.58 -31.28 16 14 C 0.26 14.16 5.43 85.63 0.46 14.62 16 15 C -0.56 -29.57 9.28 25.60 0.24 -29.34 16 16 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 19 Si 0.98 41.37 29.54 68.60 2.03 43.40 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H 0.13 4.27 5.42 -2.39 -0.01 4.26 16 24 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.15 2.80 8.14 -2.40 -0.02 2.78 16 26 H 0.16 2.89 7.21 -2.91 -0.02 2.87 16 27 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.15 2.74 6.41 -2.91 -0.02 2.72 16 30 H 0.41 13.72 6.36 -92.71 -0.59 13.13 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -80.88 293.64 0.13 -80.75 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.56 Total: 17.94 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 3.83 Total: -32.86 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -2.30 Total: -86.28 kcal Atomic # 8 Polarization: -100.13 SS G_CDS: -3.71 Total: -103.84 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 81.18 SS G_CDS: -0.29 Total: 80.89 kcal Total: -80.88 0.13 -80.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344454629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.399 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds