Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42103 * 108.57851 * 2 1 4 4 O 1.42097 * 108.58200 * 228.97595 * 2 1 3 5 5 C 1.81401 * 101.92177 * 114.48406 * 2 1 3 6 6 C 1.50694 * 109.47083 * 180.02562 * 5 2 1 7 7 C 1.38382 * 119.84655 * 270.32064 * 6 5 2 8 8 C 1.37938 * 120.14960 * 180.28501 * 7 6 5 9 9 C 1.39652 * 119.84358 * 359.42095 * 8 7 6 10 10 C 1.47728 * 120.14482 * 180.30595 * 9 8 7 11 11 O 1.21591 * 120.00317 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99696 * 180.02562 * 10 9 8 13 13 C 1.36872 * 120.00066 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99846 * 359.97438 * 13 12 10 15 15 C 1.39051 * 120.00056 * 180.02562 * 13 12 10 16 16 N 1.31361 * 120.00013 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99760 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47080 * 90.00284 * 17 15 13 19 19 H 1.48499 * 109.46822 * 209.99724 * 17 15 13 20 20 H 1.48492 * 109.47394 * 330.00253 * 17 15 13 21 21 C 1.39640 * 119.70285 * 0.27987 * 9 8 7 22 22 C 1.37943 * 119.84531 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47544 * 305.51546 * 1 2 3 24 24 H 1.09009 * 109.47016 * 65.51139 * 1 2 3 25 25 H 1.09001 * 109.47355 * 185.50895 * 1 2 3 26 26 H 1.09003 * 109.46936 * 59.99790 * 5 2 1 27 27 H 1.08995 * 109.47197 * 300.00331 * 5 2 1 28 28 H 1.07998 * 119.92427 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.07979 * 179.70291 * 8 7 6 30 30 H 0.97007 * 119.99940 * 0.02562 * 12 10 9 31 31 H 0.96994 * 119.99662 * 180.02562 * 16 15 13 32 32 H 1.07996 * 120.07865 * 180.02562 * 21 9 8 33 33 H 1.07997 * 119.92322 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6826 -0.8171 1.7957 7 6 4.3667 -1.9438 1.3746 8 6 5.7333 -2.0275 1.5420 9 6 6.4280 -0.9666 2.1271 10 6 7.8926 -1.0464 2.3034 11 8 8.4958 -2.0374 1.9393 12 7 8.5600 -0.0210 2.8689 13 6 9.9168 -0.0950 3.0328 14 1 10.4526 -0.9752 2.7094 15 6 10.6053 0.9626 3.6167 16 7 11.9076 0.8918 3.7736 17 14 9.6785 2.4847 4.1767 18 1 9.2484 2.3113 5.5874 19 1 10.5657 3.6709 4.0720 20 1 8.4846 2.6819 3.3160 21 6 5.7322 0.1700 2.5441 22 6 4.3648 0.2381 2.3753 23 1 -0.3634 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6665 27 1 1.7610 -0.1170 2.4042 28 1 3.8288 -2.7613 0.9176 29 1 6.2655 -2.9094 1.2173 30 1 8.0786 0.7691 3.1604 31 1 12.3878 1.6294 4.1812 32 1 6.2634 0.9940 2.9968 33 1 3.8253 1.1164 2.6977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701287936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -74.711719 kcal Electronic energy + Delta-G solvation = -19359.708225 eV Core-core repulsion = 16092.169292 eV Total energy + Delta-G solvation = -3267.538933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.59500 -37.78017 -37.17243 -36.18812 -34.19831 -33.02533 -31.86266 -30.73348 -30.03962 -27.87264 -24.98555 -22.52967 -22.10148 -19.56537 -19.10905 -18.85294 -16.96218 -16.86877 -16.43884 -16.22901 -15.44755 -15.04526 -14.81389 -14.32181 -13.85320 -13.70490 -13.59771 -13.47455 -13.40579 -12.85946 -12.75812 -12.55849 -12.29824 -12.24765 -12.17052 -11.66710 -11.39892 -11.28851 -10.95152 -10.89824 -10.67973 -10.10113 -9.73104 -8.84677 -8.68365 -8.54852 -8.32576 -6.50222 -3.92436 -0.39837 1.13109 1.54039 2.47277 2.95730 2.99017 3.07346 3.34029 3.50355 3.68730 3.96555 4.23407 4.31284 4.33028 4.40524 4.50143 4.68981 5.01875 5.07820 5.15057 5.18741 5.23069 5.50973 5.59947 5.74630 5.97172 6.14323 6.46854 6.49813 6.69135 7.02525 7.40712 8.00505 8.43594 8.78541 9.24952 9.71227 10.61242 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.003971 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.482965 B = 7048.764742 C = 7637.650589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.413 3.587 3 O -0.932 6.932 4 O -0.932 6.932 5 C -0.555 4.555 6 C -0.104 4.104 7 C -0.104 4.104 8 C -0.076 4.076 9 C -0.081 4.081 10 C 0.470 3.530 11 O -0.578 6.578 12 N -0.566 5.566 13 C -0.298 4.298 14 H 0.125 0.875 15 C 0.044 3.956 16 N -0.863 5.863 17 Si 0.877 3.123 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.266 1.266 21 C -0.110 4.110 22 C -0.102 4.102 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.372 0.628 31 H 0.278 0.722 32 H 0.126 0.874 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.324 0.572 -2.098 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.595 3.405 3 O -0.929 6.929 4 O -0.929 6.929 5 C -0.683 4.683 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.095 4.095 9 C -0.085 4.085 10 C 0.259 3.741 11 O -0.463 6.463 12 N -0.203 5.203 13 C -0.427 4.427 14 H 0.143 0.857 15 C -0.162 4.162 16 N -0.501 5.501 17 Si 0.703 3.297 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.191 1.191 21 C -0.130 4.130 22 C -0.121 4.121 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.207 0.793 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.125 0.341 -2.923 24.304 hybrid contribution -1.224 1.069 1.184 2.010 sum -25.349 1.410 -1.739 25.448 Atomic orbital electron populations 1.30346 1.27595 1.11387 1.11671 1.08363 0.77993 0.76169 0.77981 1.93607 1.78718 1.34354 1.86269 1.93607 1.78697 1.66910 1.53671 1.29245 1.01773 1.14298 1.22966 1.18845 0.90927 0.96588 1.04288 1.21025 0.94528 0.97263 0.99509 1.21244 0.93151 0.98645 0.96453 1.20485 0.94979 0.94579 0.98462 1.17570 0.85762 0.85204 0.85576 1.90641 1.68745 1.31988 1.54937 1.42244 1.08654 1.16338 1.53025 1.19585 0.80454 1.05724 1.36891 0.85716 1.25141 0.95626 0.98253 0.97179 1.69595 1.06515 1.32846 1.41107 0.86683 0.80162 0.83002 0.79864 1.19120 1.19609 1.19115 1.21341 0.94122 0.97662 0.99867 1.20944 0.94397 0.97875 0.98892 0.85444 0.85354 0.85424 0.84229 0.84280 0.85160 0.84226 0.79316 0.91108 0.85623 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.50 10.62 101.05 1.07 -1.42 16 2 S 2.41 20.37 5.34 -107.50 -0.57 19.80 16 3 O -0.93 -11.73 18.10 -57.83 -1.05 -12.77 16 4 O -0.93 -11.68 18.10 -57.83 -1.05 -12.73 16 5 C -0.56 -3.91 5.92 36.00 0.21 -3.70 16 6 C -0.10 -1.29 5.15 -104.52 -0.54 -1.83 16 7 C -0.10 -1.43 9.68 -39.64 -0.38 -1.82 16 8 C -0.08 -1.30 9.60 -39.16 -0.38 -1.67 16 9 C -0.08 -1.57 5.87 -104.97 -0.62 -2.18 16 10 C 0.47 11.41 7.72 -12.38 -0.10 11.31 16 11 O -0.58 -16.13 15.92 5.29 0.08 -16.05 16 12 N -0.57 -13.89 5.03 -11.87 -0.06 -13.95 16 13 C -0.30 -8.39 10.16 -15.00 -0.15 -8.54 16 14 H 0.13 3.98 7.38 -52.49 -0.39 3.59 16 15 C 0.04 1.17 5.50 -17.45 -0.10 1.07 16 16 N -0.86 -24.51 13.95 55.50 0.77 -23.74 16 17 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 21 C -0.11 -1.82 9.54 -39.17 -0.37 -2.19 16 22 C -0.10 -1.39 9.68 -39.64 -0.38 -1.77 16 23 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 24 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 26 H 0.14 0.56 8.09 -51.92 -0.42 0.14 16 27 H 0.14 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.14 2.41 7.65 -52.49 -0.40 2.01 16 30 H 0.37 8.01 3.79 -40.82 -0.15 7.86 16 31 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.13 1.93 6.40 -52.49 -0.34 1.59 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -37.91 304.61 -7.12 -45.03 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -3.40 Total: 8.34 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.73 Total: -12.74 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.71 Total: -37.68 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.01 Total: -41.55 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Atomic # 16 Polarization: 20.37 SS G_CDS: -0.57 Total: 19.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.91 -7.12 -45.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701287936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.677 kcal (2) G-P(sol) polarization free energy of solvation -37.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds