Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42103 * 108.57851 * 2 1 4 4 O 1.42097 * 108.58200 * 228.97595 * 2 1 3 5 5 C 1.81401 * 101.92177 * 114.48406 * 2 1 3 6 6 C 1.50694 * 109.47083 * 180.02562 * 5 2 1 7 7 C 1.38382 * 119.84655 * 270.32064 * 6 5 2 8 8 C 1.37938 * 120.14960 * 180.28501 * 7 6 5 9 9 C 1.39652 * 119.84358 * 359.42095 * 8 7 6 10 10 C 1.47728 * 120.14482 * 180.30595 * 9 8 7 11 11 O 1.21591 * 120.00317 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99696 * 180.02562 * 10 9 8 13 13 C 1.36872 * 120.00066 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99846 * 359.97438 * 13 12 10 15 15 C 1.39051 * 120.00056 * 180.02562 * 13 12 10 16 16 N 1.31361 * 120.00013 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99760 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47080 * 90.00284 * 17 15 13 19 19 H 1.48499 * 109.46822 * 209.99724 * 17 15 13 20 20 H 1.48492 * 109.47394 * 330.00253 * 17 15 13 21 21 C 1.39640 * 119.70285 * 0.27987 * 9 8 7 22 22 C 1.37943 * 119.84531 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.47544 * 305.51546 * 1 2 3 24 24 H 1.09009 * 109.47016 * 65.51139 * 1 2 3 25 25 H 1.09001 * 109.47355 * 185.50895 * 1 2 3 26 26 H 1.09003 * 109.46936 * 59.99790 * 5 2 1 27 27 H 1.08995 * 109.47197 * 300.00331 * 5 2 1 28 28 H 1.07998 * 119.92427 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.07979 * 179.70291 * 8 7 6 30 30 H 0.97007 * 119.99940 * 0.02562 * 12 10 9 31 31 H 0.96994 * 119.99662 * 180.02562 * 16 15 13 32 32 H 1.07996 * 120.07865 * 180.02562 * 21 9 8 33 33 H 1.07997 * 119.92322 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6826 -0.8171 1.7957 7 6 4.3667 -1.9438 1.3746 8 6 5.7333 -2.0275 1.5420 9 6 6.4280 -0.9666 2.1271 10 6 7.8926 -1.0464 2.3034 11 8 8.4958 -2.0374 1.9393 12 7 8.5600 -0.0210 2.8689 13 6 9.9168 -0.0950 3.0328 14 1 10.4526 -0.9752 2.7094 15 6 10.6053 0.9626 3.6167 16 7 11.9076 0.8918 3.7736 17 14 9.6785 2.4847 4.1767 18 1 9.2484 2.3113 5.5874 19 1 10.5657 3.6709 4.0720 20 1 8.4846 2.6819 3.3160 21 6 5.7322 0.1700 2.5441 22 6 4.3648 0.2381 2.3753 23 1 -0.3634 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6665 27 1 1.7610 -0.1170 2.4042 28 1 3.8288 -2.7613 0.9176 29 1 6.2655 -2.9094 1.2173 30 1 8.0786 0.7691 3.1604 31 1 12.3878 1.6294 4.1812 32 1 6.2634 0.9940 2.9968 33 1 3.8253 1.1164 2.6977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701287936.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -106.409918 kcal Electronic energy + Delta-G solvation = -19361.082763 eV Core-core repulsion = 16092.169292 eV Total energy + Delta-G solvation = -3268.913470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08762 -39.41042 -37.91621 -36.92822 -36.23923 -34.31381 -33.68426 -31.97864 -30.41638 -29.00677 -26.77772 -23.76693 -23.46869 -21.36719 -20.68871 -19.74853 -18.43195 -17.58178 -17.44595 -17.10527 -16.89241 -16.23185 -16.05203 -15.72851 -15.69678 -15.18773 -14.69316 -14.43450 -14.19526 -13.95085 -13.82757 -13.71863 -13.48912 -13.06567 -13.00990 -12.93697 -12.85683 -12.54020 -12.10221 -12.06547 -11.98003 -11.66639 -11.59379 -10.69590 -10.40196 -10.03196 -9.73933 -8.54294 -6.12245 -1.02376 -0.08897 0.34393 1.24389 1.30726 1.38676 1.87326 1.98009 2.14019 2.71007 2.72991 2.84600 3.16828 3.17478 3.48633 3.73573 3.93688 3.99454 4.14795 4.18634 4.34311 4.37486 4.54402 4.57506 4.84774 5.00438 5.05818 5.23203 5.31455 5.35159 5.49141 5.82074 5.85651 6.43897 6.70995 7.21038 7.76662 8.62375 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.003971 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.482965 B = 7048.764742 C = 7637.650589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.404 3.596 3 O -0.984 6.984 4 O -0.987 6.987 5 C -0.553 4.553 6 C -0.086 4.086 7 C -0.107 4.107 8 C -0.088 4.088 9 C -0.122 4.122 10 C 0.473 3.527 11 O -0.628 6.628 12 N -0.568 5.568 13 C -0.336 4.336 14 H 0.061 0.939 15 C -0.007 4.007 16 N -0.917 5.917 17 Si 0.957 3.043 18 H -0.247 1.247 19 H -0.264 1.264 20 H -0.236 1.236 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.159 0.841 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.163 0.837 29 H 0.123 0.877 30 H 0.390 0.610 31 H 0.285 0.715 32 H 0.135 0.865 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.737 2.480 -1.139 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.592 3.408 3 O -0.982 6.982 4 O -0.984 6.984 5 C -0.681 4.681 6 C -0.088 4.088 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.126 4.126 10 C 0.264 3.736 11 O -0.515 6.515 12 N -0.206 5.206 13 C -0.465 4.465 14 H 0.079 0.921 15 C -0.208 4.208 16 N -0.556 5.556 17 Si 0.775 3.225 18 H -0.171 1.171 19 H -0.189 1.189 20 H -0.159 1.159 21 C -0.129 4.129 22 C -0.124 4.124 23 H 0.177 0.823 24 H 0.152 0.848 25 H 0.176 0.824 26 H 0.199 0.801 27 H 0.201 0.799 28 H 0.180 0.820 29 H 0.141 0.859 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -30.510 2.249 -1.978 30.657 hybrid contribution 0.426 0.295 0.779 0.936 sum -30.084 2.545 -1.199 30.215 Atomic orbital electron populations 1.30070 1.20501 1.14294 1.13517 1.08104 0.80542 0.74480 0.77641 1.93553 1.81272 1.36437 1.86900 1.93554 1.81294 1.67618 1.55915 1.29350 0.97748 1.17797 1.23169 1.19469 0.94246 0.94776 1.00292 1.21403 0.92951 0.99129 0.99071 1.21309 0.95009 0.97722 0.96723 1.20129 0.91748 0.97580 1.03112 1.18553 0.88060 0.83935 0.83097 1.90589 1.70742 1.33882 1.56333 1.41959 1.07241 1.17316 1.54133 1.19110 0.82289 1.05032 1.40080 0.92091 1.26167 0.96537 1.01940 0.96108 1.69750 1.08759 1.34624 1.42448 0.85488 0.79534 0.76973 0.80459 1.17121 1.18853 1.15939 1.21518 0.95682 0.96484 0.99176 1.21445 0.93185 0.99551 0.98197 0.82255 0.84828 0.82363 0.80148 0.79868 0.81960 0.85901 0.77327 0.90498 0.84722 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.58 10.62 113.37 1.20 0.62 16 2 S 2.40 30.39 5.34 -56.49 -0.30 30.09 16 3 O -0.98 -21.82 18.10 -127.37 -2.31 -24.13 16 4 O -0.99 -22.44 18.10 -127.37 -2.30 -24.75 16 5 C -0.55 -4.17 5.92 71.23 0.42 -3.74 16 6 C -0.09 -1.76 5.15 -19.80 -0.10 -1.86 16 7 C -0.11 -2.67 9.68 22.23 0.22 -2.46 16 8 C -0.09 -3.08 9.60 22.54 0.22 -2.86 16 9 C -0.12 -4.83 5.87 -20.09 -0.12 -4.95 16 10 C 0.47 24.51 7.72 86.75 0.67 25.18 16 11 O -0.63 -38.27 15.92 -4.00 -0.06 -38.34 16 12 N -0.57 -29.27 5.03 -309.72 -1.56 -30.83 16 13 C -0.34 -20.49 10.16 84.10 0.85 -19.63 16 14 H 0.06 4.37 7.38 -2.91 -0.02 4.35 16 15 C -0.01 -0.37 5.50 84.96 0.47 0.10 16 16 N -0.92 -55.20 13.95 21.68 0.30 -54.90 16 17 Si 0.96 39.01 27.74 68.60 1.90 40.91 16 18 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.24 -8.35 6.52 99.48 0.65 -7.71 16 21 C -0.11 -3.41 9.54 22.54 0.22 -3.20 16 22 C -0.11 -2.43 9.68 22.23 0.22 -2.21 16 23 H 0.16 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.16 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.18 0.02 8.09 -2.39 -0.02 0.00 16 27 H 0.18 -0.09 8.08 -2.39 -0.02 -0.11 16 28 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.12 4.56 7.65 -2.91 -0.02 4.54 16 30 H 0.39 16.83 3.79 -92.70 -0.35 16.48 16 31 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.14 3.83 6.40 -2.91 -0.02 3.82 16 33 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -95.66 304.61 0.66 -94.99 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.73 Total: 21.96 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.26 Total: -15.01 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -1.26 Total: -85.73 kcal Atomic # 8 Polarization: -82.54 SS G_CDS: -4.67 Total: -87.21 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Atomic # 16 Polarization: 30.39 SS G_CDS: -0.30 Total: 30.09 kcal Total: -95.66 0.66 -94.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701287936.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.416 kcal (2) G-P(sol) polarization free energy of solvation -95.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds