Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42099 * 110.54037 * 2 1 4 4 O 1.42097 * 110.54231 * 223.24341 * 2 1 3 5 5 N 1.65607 * 104.44618 * 111.61971 * 2 1 3 6 6 C 1.34773 * 120.00138 * 65.00551 * 5 2 1 7 7 O 1.21282 * 119.99503 * 359.97438 * 6 5 2 8 8 C 1.50694 * 120.00092 * 179.97438 * 6 5 2 9 9 C 1.50707 * 109.47262 * 179.97438 * 8 6 5 10 10 C 1.37643 * 120.12639 * 265.30991 * 9 8 6 11 11 C 1.38615 * 120.24281 * 180.31829 * 10 9 8 12 12 C 1.38658 * 120.50051 * 359.66907 * 11 10 9 13 13 C 1.37593 * 120.25264 * 0.02562 * 12 11 10 14 14 C 1.40688 * 120.12508 * 84.99750 * 9 8 6 15 15 C 1.41401 * 120.24844 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99289 * 334.28466 * 15 14 9 17 17 C 1.39937 * 120.00394 * 154.28925 * 15 14 9 18 18 N 1.30829 * 120.00181 * 334.60180 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 154.60226 * 17 15 14 20 20 H 1.48505 * 109.47160 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47100 * 300.00105 * 19 17 15 22 22 H 1.48502 * 109.47051 * 60.00179 * 19 17 15 23 23 H 1.08996 * 109.46922 * 308.38087 * 1 2 3 24 24 H 1.08995 * 109.46766 * 68.37633 * 1 2 3 25 25 H 1.08994 * 109.46893 * 188.37960 * 1 2 3 26 26 H 0.97000 * 119.99833 * 244.99871 * 5 2 1 27 27 H 1.09001 * 109.46892 * 59.99768 * 8 6 5 28 28 H 1.08991 * 109.47294 * 299.99778 * 8 6 5 29 29 H 1.07998 * 119.87840 * 0.02562 * 10 9 8 30 30 H 1.07996 * 119.74749 * 179.68975 * 11 10 9 31 31 H 1.08000 * 119.87393 * 180.02562 * 12 11 10 32 32 H 1.07996 * 120.12941 * 180.02562 * 13 12 11 33 33 H 0.96998 * 119.99709 * 354.17607 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4909 6 6 1.9177 -1.8601 1.8222 7 8 1.3363 -2.5693 1.0286 8 6 2.2942 -2.3979 3.1786 9 6 1.8375 -3.8293 3.2959 10 6 0.6234 -4.1219 3.8747 11 6 0.2039 -5.4380 3.9898 12 6 0.9969 -6.4732 3.5184 13 6 2.2114 -6.2037 2.9307 14 6 2.6475 -4.8712 2.8084 15 6 3.8935 -4.5822 2.2055 16 1 4.0589 -3.6208 1.7419 17 6 4.9121 -5.5417 2.2093 18 7 4.9408 -6.4616 3.1391 19 14 6.2309 -5.5092 0.8867 20 1 7.1868 -6.6229 1.1134 21 1 5.5977 -5.6635 -0.4476 22 1 6.9570 -4.2151 0.9434 23 1 -0.3633 0.6380 0.8056 24 1 -0.3633 0.3787 -0.9553 25 1 -0.3633 -1.0166 0.1498 26 1 2.6920 -0.0235 2.1257 27 1 1.8144 -1.7992 3.9528 28 1 3.3762 -2.3503 3.3009 29 1 -0.0025 -3.3234 4.2447 30 1 -0.7479 -5.6587 4.4498 31 1 0.6599 -7.4949 3.6129 32 1 2.8273 -7.0115 2.5638 33 1 4.3073 -6.4292 3.8730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761100449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -124.273199 kcal Electronic energy + Delta-G solvation = -20293.807381 eV Core-core repulsion = 17024.119301 eV Total energy + Delta-G solvation = -3269.688080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21810 -39.40431 -38.26242 -37.20734 -35.73838 -35.43097 -33.51303 -31.09279 -30.42865 -28.73137 -26.82650 -23.40128 -22.81080 -21.51236 -20.75575 -19.66551 -18.98538 -18.41288 -17.57726 -16.80399 -16.64282 -16.46651 -16.04548 -15.75522 -15.35185 -15.22920 -14.32355 -14.15228 -14.08311 -13.87650 -13.78204 -13.46736 -13.36009 -13.20537 -12.99683 -12.85492 -12.62103 -12.28293 -12.23124 -11.99585 -11.67650 -11.47896 -11.26210 -11.17551 -10.83400 -9.43257 -9.42066 -9.05471 -6.39758 -0.94316 0.88650 1.00851 1.18524 1.45812 1.46731 1.61119 1.75462 2.29345 2.65755 2.71476 3.11273 3.42993 3.74424 3.97057 4.04498 4.11832 4.31685 4.34562 4.50977 4.60242 4.75113 4.84557 5.00348 5.10270 5.33842 5.51226 5.73207 5.85725 5.87068 5.99588 6.08308 6.30638 6.47145 6.63815 6.85725 7.02747 8.09320 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.006762 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.318987 B = 4140.017521 C = 5423.822719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.596 3.404 3 O -0.970 6.970 4 O -0.989 6.989 5 N -1.043 6.043 6 C 0.539 3.461 7 O -0.523 6.523 8 C -0.074 4.074 9 C -0.197 4.197 10 C -0.073 4.073 11 C -0.249 4.249 12 C -0.096 4.096 13 C -0.245 4.245 14 C 0.084 3.916 15 C -0.545 4.545 16 H 0.069 0.931 17 C 0.007 3.993 18 N -0.818 5.818 19 Si 1.098 2.902 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.254 1.254 23 H 0.165 0.835 24 H 0.158 0.842 25 H 0.130 0.870 26 H 0.448 0.552 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 13.860 0.374 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.694 3.306 3 O -0.961 6.961 4 O -0.980 6.980 5 N -0.810 5.810 6 C 0.327 3.673 7 O -0.395 6.395 8 C -0.115 4.115 9 C -0.199 4.199 10 C -0.091 4.091 11 C -0.268 4.268 12 C -0.114 4.114 13 C -0.264 4.264 14 C 0.082 3.918 15 C -0.574 4.574 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.442 5.442 19 Si 0.916 3.084 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.178 1.178 23 H 0.184 0.816 24 H 0.176 0.824 25 H 0.148 0.852 26 H 0.288 0.712 27 H 0.157 0.843 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.478 12.750 -1.376 13.946 hybrid contribution -1.545 0.382 1.009 1.884 sum -7.023 13.132 -0.367 14.897 Atomic orbital electron populations 1.30208 1.21392 1.13249 1.14642 1.05246 0.80003 0.72582 0.72741 1.93608 1.79781 1.37273 1.85403 1.93624 1.79263 1.62255 1.62815 1.54829 1.67246 1.21112 1.37772 1.21258 0.75638 0.79520 0.90868 1.90829 1.39982 1.56826 1.51902 1.20480 1.04197 0.93956 0.92857 1.19485 0.98344 0.93639 1.08470 1.20866 0.94483 0.96439 0.97331 1.20752 1.01608 0.92952 1.11462 1.20911 0.94205 0.98576 0.97722 1.21141 0.98680 0.96582 1.10018 1.17796 0.93149 0.91846 0.89051 1.20586 0.98519 1.03364 1.34885 0.91325 1.28035 1.02020 0.90783 1.00098 1.70553 1.33875 1.31802 1.07959 0.83244 0.73509 0.78566 0.73044 1.19119 1.20398 1.17821 0.81647 0.82371 0.85172 0.71239 0.84288 0.87739 0.85081 0.86150 0.87524 0.90215 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -9.98 10.70 113.37 1.21 -8.77 16 2 S 2.60 64.12 5.75 -56.49 -0.32 63.80 16 3 O -0.97 -25.57 18.08 -127.65 -2.31 -27.88 16 4 O -0.99 -36.99 17.04 -120.72 -2.06 -39.05 16 5 N -1.04 -24.55 5.60 -173.54 -0.97 -25.53 16 6 C 0.54 17.81 7.20 87.66 0.63 18.45 16 7 O -0.52 -22.03 14.14 13.34 0.19 -21.84 16 8 C -0.07 -2.42 5.18 29.10 0.15 -2.27 16 9 C -0.20 -8.58 4.43 -19.40 -0.09 -8.67 16 10 C -0.07 -2.87 9.66 22.22 0.21 -2.65 16 11 C -0.25 -10.19 10.05 22.46 0.23 -9.96 16 12 C -0.10 -4.41 10.02 22.22 0.22 -4.18 16 13 C -0.24 -12.94 7.95 22.73 0.18 -12.76 16 14 C 0.08 4.41 5.30 -21.29 -0.11 4.30 16 15 C -0.54 -29.21 8.08 23.46 0.19 -29.02 16 16 H 0.07 3.61 6.73 -2.91 -0.02 3.59 16 17 C 0.01 0.39 4.94 85.25 0.42 0.81 16 18 N -0.82 -44.71 12.31 21.82 0.27 -44.44 16 19 Si 1.10 46.08 30.00 68.60 2.06 48.14 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.13 2.56 7.19 -2.39 -0.02 2.54 16 26 H 0.45 6.77 8.79 -96.74 -0.85 5.92 16 27 H 0.14 3.04 8.05 -2.39 -0.02 3.02 16 28 H 0.10 3.51 7.06 -2.39 -0.02 3.49 16 29 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.08 4.51 6.49 -2.91 -0.02 4.49 16 33 H 0.29 16.04 6.68 -92.71 -0.62 15.42 16 Total: -1.00 -78.37 299.21 0.55 -77.82 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.45 Total: 23.71 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.25 Total: -54.73 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -0.70 Total: -69.97 kcal Atomic # 8 Polarization: -84.59 SS G_CDS: -4.18 Total: -88.77 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.06 Total: 48.14 kcal Atomic # 16 Polarization: 64.12 SS G_CDS: -0.32 Total: 63.80 kcal Total: -78.37 0.55 -77.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761100449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.454 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds