Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48497 * 109.46959 * 264.90416 * 3 2 1 5 5 H 1.48494 * 109.47107 * 24.90468 * 3 2 1 6 6 H 1.48503 * 109.46978 * 144.90606 * 3 2 1 7 7 C 1.37882 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 185.89926 * 7 2 1 9 9 C 1.50702 * 119.99827 * 5.90435 * 7 2 1 10 10 O 1.42892 * 110.64192 * 59.63694 * 9 7 2 11 11 C 1.55157 * 110.71787 * 182.77794 * 9 7 2 12 12 C 1.54912 * 101.57830 * 153.86203 * 11 9 7 13 13 N 1.47422 * 104.83548 * 322.99091 * 12 11 9 14 14 C 1.34769 * 125.65091 * 203.86320 * 13 12 11 15 15 O 1.21287 * 120.00525 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00154 * 0.02562 * 14 13 12 17 17 O 1.42899 * 109.47384 * 179.97438 * 16 14 13 18 18 C 1.42909 * 113.99895 * 179.97438 * 17 16 14 19 19 F 1.39897 * 109.46837 * 60.00373 * 18 17 16 20 20 F 1.39905 * 109.46928 * 180.02562 * 18 17 16 21 21 F 1.39900 * 109.47226 * 300.00328 * 18 17 16 22 22 C 1.47026 * 108.70156 * 24.12611 * 13 12 11 23 23 H 0.96998 * 120.00248 * 0.02562 * 1 2 3 24 24 H 0.96705 * 114.00609 * 297.55337 * 10 9 7 25 25 H 1.09008 * 111.00101 * 35.79245 * 11 9 7 26 26 H 1.08991 * 111.03924 * 271.94879 * 11 9 7 27 27 H 1.09003 * 110.36443 * 204.15261 * 12 11 9 28 28 H 1.09000 * 110.36592 * 81.83318 * 12 11 9 29 29 H 1.09005 * 109.47312 * 300.00313 * 16 14 13 30 30 H 1.09003 * 109.46977 * 60.00040 * 16 14 13 31 31 H 1.09004 * 109.88070 * 118.35990 * 22 13 12 32 32 H 1.08992 * 109.88476 * 239.52059 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9842 -1.3945 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8050 7 6 2.0046 -1.1941 -0.0005 8 1 3.0803 -1.1965 0.0956 9 6 1.2571 -2.4957 -0.1354 10 8 0.5262 -2.5320 -1.3627 11 6 2.2305 -3.7001 -0.0403 12 6 1.2923 -4.8179 0.4794 13 7 0.3830 -4.1400 1.4211 14 6 -0.2833 -4.7308 2.4327 15 8 -1.0083 -4.0721 3.1479 16 6 -0.1277 -6.2099 2.6752 17 8 -0.9276 -6.5959 3.7947 18 6 -0.8520 -7.9875 4.1109 19 9 0.4715 -8.3258 4.4129 20 9 -1.6670 -8.2598 5.2149 21 9 -1.2867 -8.7393 3.0140 22 6 0.3186 -2.7137 1.0702 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1562 -1.8505 -1.4346 25 1 3.0314 -3.4999 0.6716 26 1 2.6356 -3.9541 -1.0197 27 1 1.8678 -5.5869 0.9948 28 1 0.7284 -5.2537 -0.3453 29 1 -0.4507 -6.7591 1.7907 30 1 0.9185 -6.4362 2.8814 31 1 -0.7022 -2.4444 0.7988 32 1 0.6518 -2.1090 1.9135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823532173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -288.650638 kcal Electronic energy + Delta-G solvation = -22889.703266 eV Core-core repulsion = 18628.277634 eV Total energy + Delta-G solvation = -4261.425632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.37296 -48.11029 -48.06498 -39.80454 -38.21862 -37.00610 -34.45330 -32.30692 -30.57176 -29.06757 -27.66842 -25.48014 -24.59711 -22.75623 -19.92660 -19.66209 -19.47707 -19.17698 -18.48815 -17.28772 -16.61408 -16.19510 -15.78510 -15.18867 -14.91068 -14.80321 -14.49931 -14.45925 -14.43381 -14.26170 -14.17346 -14.15756 -13.24212 -13.03259 -12.97886 -12.94231 -12.13664 -11.78790 -11.56914 -11.14265 -11.11139 -10.92706 -10.77454 -10.53961 -10.27486 -9.58349 -9.41950 -8.76749 -8.41546 -8.09317 -6.35177 -4.43930 1.58124 2.73804 2.81911 3.18228 3.25932 3.27528 3.51308 3.89335 3.93444 4.22290 4.50308 4.74065 4.83505 4.92414 5.22372 5.54756 5.62921 5.69635 5.86550 6.04030 6.36859 6.62783 6.74237 6.79441 7.15293 7.26102 7.66071 7.89823 7.98192 8.44130 8.59755 9.19123 9.28741 10.72441 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.003843 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.799691 B = 7283.968389 C = 7523.461684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.094 3.906 13 N -0.607 5.607 14 C 0.525 3.475 15 O -0.525 6.525 16 C 0.040 3.960 17 O -0.347 6.347 18 C 0.595 3.405 19 F -0.176 7.176 20 F -0.140 7.140 21 F -0.176 7.176 22 C 0.106 3.894 23 H 0.271 0.729 24 H 0.382 0.618 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -14.437 3.475 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.155 4.155 12 C -0.029 4.029 13 N -0.341 5.341 14 C 0.310 3.690 15 O -0.401 6.401 16 C -0.039 4.039 17 O -0.269 6.269 18 C 0.503 3.497 19 F -0.158 7.158 20 F -0.121 7.121 21 F -0.158 7.158 22 C -0.015 4.015 23 H 0.081 0.919 24 H 0.232 0.768 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.901 -14.396 3.920 14.947 hybrid contribution 0.114 0.986 0.126 1.000 sum 1.015 -13.410 4.046 14.044 Atomic orbital electron populations 1.69730 1.06016 1.28096 1.49241 1.25073 0.95042 0.99847 0.93224 0.86408 0.79725 0.82263 0.78471 1.20243 1.21051 1.19743 1.21475 0.94145 0.90167 1.52096 0.91427 1.19500 0.86896 0.92272 0.80569 1.86117 1.54238 1.58991 1.39814 1.22753 0.97210 0.94389 1.01100 1.22466 0.91971 0.96158 0.92300 1.48749 1.44284 1.12262 1.28854 1.19198 0.81335 0.87254 0.81200 1.90757 1.38108 1.64829 1.46431 1.22665 0.96172 0.96869 0.88172 1.88424 1.68482 1.18843 1.51175 1.19548 0.74259 0.80545 0.75342 1.93260 1.36668 1.92640 1.93273 1.93274 1.72978 1.92916 1.52953 1.93262 1.89791 1.77706 1.55075 1.23153 1.02039 0.76102 1.00194 0.91898 0.76818 0.90261 0.90229 0.91843 0.91162 0.88094 0.88122 0.91274 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 11.02 55.43 0.61 -22.49 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.54 8.10 -34.44 -0.28 -13.82 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.26 16 9 C 0.25 5.64 0.85 -89.94 -0.08 5.56 16 10 O -0.58 -13.78 13.07 -35.23 -0.46 -14.24 16 11 C -0.12 -2.11 6.22 -24.58 -0.15 -2.26 16 12 C 0.09 1.44 6.68 -2.53 -0.02 1.43 16 13 N -0.61 -11.48 3.33 -170.52 -0.57 -12.05 16 14 C 0.52 9.78 7.93 -10.99 -0.09 9.69 16 15 O -0.52 -12.13 16.83 -14.36 -0.24 -12.37 16 16 C 0.04 0.53 5.15 36.00 0.19 0.71 16 17 O -0.35 -5.06 10.11 -55.14 -0.56 -5.62 16 18 C 0.60 6.95 3.75 101.05 0.38 7.33 16 19 F -0.18 -1.91 16.86 2.25 0.04 -1.87 16 20 F -0.14 -1.66 17.53 2.25 0.04 -1.62 16 21 F -0.18 -1.92 16.86 2.25 0.04 -1.88 16 22 C 0.11 2.43 5.24 -3.06 -0.02 2.41 16 23 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.38 9.28 7.52 45.56 0.34 9.63 16 25 H 0.08 1.38 8.04 -51.92 -0.42 0.96 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.08 7.73 -51.93 -0.40 0.68 16 30 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 31 H 0.07 1.74 7.91 -51.93 -0.41 1.33 16 32 H 0.07 1.81 7.81 -51.93 -0.41 1.40 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -28.63 291.97 -4.34 -32.97 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -2.46 Total: 7.11 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -0.16 Total: 12.78 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.04 Total: -34.54 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.26 Total: -32.23 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.12 Total: -5.37 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.63 -4.34 -32.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823532173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.680 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds