Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48497 * 109.46959 * 264.90416 * 3 2 1 5 5 H 1.48494 * 109.47107 * 24.90468 * 3 2 1 6 6 H 1.48503 * 109.46978 * 144.90606 * 3 2 1 7 7 C 1.37882 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 185.89926 * 7 2 1 9 9 C 1.50702 * 119.99827 * 5.90435 * 7 2 1 10 10 O 1.42892 * 110.64192 * 59.63694 * 9 7 2 11 11 C 1.55157 * 110.71787 * 182.77794 * 9 7 2 12 12 C 1.54912 * 101.57830 * 153.86203 * 11 9 7 13 13 N 1.47422 * 104.83548 * 322.99091 * 12 11 9 14 14 C 1.34769 * 125.65091 * 203.86320 * 13 12 11 15 15 O 1.21287 * 120.00525 * 180.02562 * 14 13 12 16 16 C 1.50697 * 120.00154 * 0.02562 * 14 13 12 17 17 O 1.42899 * 109.47384 * 179.97438 * 16 14 13 18 18 C 1.42909 * 113.99895 * 179.97438 * 17 16 14 19 19 F 1.39897 * 109.46837 * 60.00373 * 18 17 16 20 20 F 1.39905 * 109.46928 * 180.02562 * 18 17 16 21 21 F 1.39900 * 109.47226 * 300.00328 * 18 17 16 22 22 C 1.47026 * 108.70156 * 24.12611 * 13 12 11 23 23 H 0.96998 * 120.00248 * 0.02562 * 1 2 3 24 24 H 0.96705 * 114.00609 * 297.55337 * 10 9 7 25 25 H 1.09008 * 111.00101 * 35.79245 * 11 9 7 26 26 H 1.08991 * 111.03924 * 271.94879 * 11 9 7 27 27 H 1.09003 * 110.36443 * 204.15261 * 12 11 9 28 28 H 1.09000 * 110.36592 * 81.83318 * 12 11 9 29 29 H 1.09005 * 109.47312 * 300.00313 * 16 14 13 30 30 H 1.09003 * 109.46977 * 60.00040 * 16 14 13 31 31 H 1.09004 * 109.88070 * 118.35990 * 22 13 12 32 32 H 1.08992 * 109.88476 * 239.52059 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9842 -1.3945 5 1 1.3969 2.6813 0.5896 6 1 3.4887 1.4737 0.8050 7 6 2.0046 -1.1941 -0.0005 8 1 3.0803 -1.1965 0.0956 9 6 1.2571 -2.4957 -0.1354 10 8 0.5262 -2.5320 -1.3627 11 6 2.2305 -3.7001 -0.0403 12 6 1.2923 -4.8179 0.4794 13 7 0.3830 -4.1400 1.4211 14 6 -0.2833 -4.7308 2.4327 15 8 -1.0083 -4.0721 3.1479 16 6 -0.1277 -6.2099 2.6752 17 8 -0.9276 -6.5959 3.7947 18 6 -0.8520 -7.9875 4.1109 19 9 0.4715 -8.3258 4.4129 20 9 -1.6670 -8.2598 5.2149 21 9 -1.2867 -8.7393 3.0140 22 6 0.3186 -2.7137 1.0702 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1562 -1.8505 -1.4346 25 1 3.0314 -3.4999 0.6716 26 1 2.6356 -3.9541 -1.0197 27 1 1.8678 -5.5869 0.9948 28 1 0.7284 -5.2537 -0.3453 29 1 -0.4507 -6.7591 1.7907 30 1 0.9185 -6.4362 2.8814 31 1 -0.7022 -2.4444 0.7988 32 1 0.6518 -2.1090 1.9135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823532173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -309.928780 kcal Electronic energy + Delta-G solvation = -22890.625955 eV Core-core repulsion = 18628.277634 eV Total energy + Delta-G solvation = -4262.348322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.25356 -49.00578 -48.91955 -41.25288 -39.53352 -38.48362 -36.15079 -34.23707 -32.10810 -30.39027 -29.23547 -26.96944 -25.85258 -24.21427 -21.52032 -20.85496 -20.59081 -20.06214 -19.61366 -19.11912 -18.02958 -17.50335 -17.21614 -16.75316 -16.18028 -15.99471 -15.72147 -15.57240 -15.44823 -15.34832 -15.09136 -15.07214 -14.78205 -14.75542 -14.56200 -14.13820 -13.63069 -13.53240 -13.24325 -12.84818 -12.53963 -12.32800 -12.28746 -12.19469 -12.02180 -11.16756 -11.11157 -10.67376 -10.28486 -9.67451 -8.27185 -6.42467 0.58483 1.40366 1.41974 1.44213 1.52460 1.70852 2.27579 2.38862 2.91119 2.99564 3.05781 3.31371 3.77671 3.80901 3.90126 4.08377 4.20950 4.38751 4.62375 4.69664 4.77564 5.03422 5.12753 5.22154 5.38038 5.50540 5.73953 6.05584 6.50096 6.65280 6.98882 7.26322 7.33006 8.78440 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.003843 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.799691 B = 7283.968389 C = 7523.461684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.231 3.769 10 O -0.584 6.584 11 C -0.113 4.113 12 C 0.096 3.904 13 N -0.609 5.609 14 C 0.517 3.483 15 O -0.583 6.583 16 C 0.049 3.951 17 O -0.376 6.376 18 C 0.606 3.394 19 F -0.167 7.167 20 F -0.143 7.143 21 F -0.168 7.168 22 C 0.122 3.878 23 H 0.269 0.731 24 H 0.374 0.626 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.033 0.967 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -16.625 3.192 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.392 6.392 11 C -0.150 4.150 12 C -0.024 4.024 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.463 6.463 16 C -0.028 4.028 17 O -0.300 6.300 18 C 0.514 3.486 19 F -0.149 7.149 20 F -0.124 7.124 21 F -0.150 7.150 22 C -0.001 4.001 23 H 0.078 0.922 24 H 0.223 0.777 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.051 0.949 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.506 -16.631 3.617 17.204 hybrid contribution -0.384 1.652 0.227 1.711 sum 2.122 -14.980 3.844 15.610 Atomic orbital electron populations 1.69845 1.07112 1.28450 1.50055 1.25790 0.95720 1.02778 0.93124 0.85523 0.78596 0.78750 0.78507 1.19739 1.21398 1.19202 1.21865 0.94448 0.91592 1.51786 0.91337 1.19727 0.87552 0.93757 0.79853 1.86107 1.54063 1.58565 1.40422 1.22761 0.96840 0.93043 1.02391 1.22718 0.91266 0.95927 0.92539 1.48762 1.45037 1.10820 1.29686 1.20192 0.79819 0.89578 0.79831 1.90727 1.40472 1.66803 1.48341 1.22691 0.98308 0.92405 0.89403 1.88378 1.69130 1.20695 1.51769 1.19273 0.74495 0.79468 0.75353 1.93280 1.35996 1.92439 1.93232 1.93272 1.73182 1.92798 1.53198 1.93281 1.89769 1.77313 1.54667 1.22594 0.99779 0.78673 0.99018 0.92157 0.77742 0.89593 0.88792 0.86404 0.89752 0.84630 0.84305 0.94868 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.05 11.02 21.45 0.24 -48.81 16 2 C 0.03 1.38 5.28 84.66 0.45 1.83 16 3 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.56 -28.23 8.10 25.60 0.21 -28.02 16 8 H 0.07 3.35 7.78 -2.91 -0.02 3.33 16 9 C 0.23 10.54 0.85 -10.35 -0.01 10.53 16 10 O -0.58 -27.79 13.07 -148.98 -1.95 -29.74 16 11 C -0.11 -3.80 6.22 31.99 0.20 -3.60 16 12 C 0.10 2.60 6.68 86.86 0.58 3.18 16 13 N -0.61 -22.36 3.33 -811.80 -2.70 -25.06 16 14 C 0.52 18.72 7.93 87.66 0.69 19.42 16 15 O -0.58 -27.61 16.83 15.99 0.27 -27.34 16 16 C 0.05 1.13 5.15 71.23 0.37 1.50 16 17 O -0.38 -10.13 10.11 -129.94 -1.31 -11.44 16 18 C 0.61 12.43 3.75 113.37 0.43 12.85 16 19 F -0.17 -3.03 16.86 44.97 0.76 -2.27 16 20 F -0.14 -3.13 17.53 44.97 0.79 -2.34 16 21 F -0.17 -3.09 16.86 44.97 0.76 -2.33 16 22 C 0.12 5.78 5.24 86.73 0.45 6.23 16 23 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 24 H 0.37 18.80 7.52 -74.05 -0.56 18.25 16 25 H 0.09 2.76 8.04 -2.38 -0.02 2.74 16 26 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.12 1.97 7.49 -2.39 -0.02 1.96 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.14 2.22 7.73 -2.38 -0.02 2.20 16 30 H 0.14 2.16 7.44 -2.39 -0.02 2.14 16 31 H 0.03 1.77 7.91 -2.39 -0.02 1.75 16 32 H 0.03 1.86 7.81 -2.39 -0.02 1.84 16 Total: -1.00 -65.57 291.97 2.86 -62.71 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.62 Total: 19.48 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 3.37 Total: 23.92 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.46 Total: -73.87 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: -2.99 Total: -68.53 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.30 Total: -6.94 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.57 2.86 -62.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823532173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.221 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -309.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds