Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48502 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46835 * 299.99668 * 3 2 1 6 6 H 1.48498 * 109.47264 * 59.99760 * 3 2 1 7 7 C 1.37871 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00429 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.63837 * 298.31604 * 9 7 2 11 11 C 1.55154 * 110.87508 * 175.06206 * 9 7 2 12 12 C 1.55123 * 101.48369 * 205.89992 * 11 9 7 13 13 N 1.47423 * 104.72450 * 37.29852 * 12 11 9 14 14 C 1.34777 * 125.64665 * 155.81937 * 13 12 11 15 15 O 1.21278 * 119.99854 * 179.69389 * 14 13 12 16 16 C 1.50703 * 120.00161 * 359.68696 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 F 1.39902 * 109.46992 * 59.99606 * 18 17 16 20 20 F 1.39902 * 109.47136 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.46751 * 299.99993 * 18 17 16 22 22 C 1.47018 * 108.69955 * 335.54881 * 13 12 11 23 23 H 0.96998 * 120.00401 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00003 * 61.68234 * 10 9 7 25 25 H 1.09002 * 111.00352 * 324.13862 * 11 9 7 26 26 H 1.09006 * 111.00140 * 87.95183 * 11 9 7 27 27 H 1.09003 * 110.49564 * 278.45141 * 12 11 9 28 28 H 1.08999 * 110.34198 * 156.06541 * 12 11 9 29 29 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 30 30 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 31 31 H 1.09008 * 109.87927 * 120.70633 * 22 13 12 32 32 H 1.08995 * 109.87990 * 241.86675 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4503 -2.6175 1.1794 11 6 2.2255 -3.7001 -0.1227 12 6 1.3105 -4.7749 -0.7660 13 7 0.4607 -4.0270 -1.7104 14 6 -0.1466 -4.5418 -2.7979 15 8 -0.8299 -3.8312 -3.5043 16 6 0.0236 -6.0005 -3.1362 17 8 -0.7109 -6.3028 -4.3241 18 6 -0.6165 -7.6685 -4.7342 19 9 -1.1126 -8.4951 -3.7204 20 9 -1.3672 -7.8584 -5.8994 21 9 0.7222 -7.9889 -4.9839 22 6 0.3802 -2.6279 -1.2658 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2277 -1.9333 1.2644 25 1 3.0649 -3.4563 -0.7738 26 1 2.5752 -4.0226 0.8581 27 1 0.6976 -5.2591 -0.0057 28 1 1.9099 -5.5136 -1.2981 29 1 -0.3490 -6.6103 -2.3132 30 1 1.0800 -6.2150 -3.2981 31 1 0.7611 -1.9686 -2.0458 32 1 -0.6534 -2.3719 -1.0331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823532179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -288.779242 kcal Electronic energy + Delta-G solvation = -22896.571564 eV Core-core repulsion = 18635.140356 eV Total energy + Delta-G solvation = -4261.431209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.37485 -48.11272 -48.06645 -39.80894 -38.21929 -37.00706 -34.44104 -32.30456 -30.56170 -29.06700 -27.66767 -25.48169 -24.59767 -22.76672 -19.92668 -19.66534 -19.48014 -19.17917 -18.49180 -17.27854 -16.61446 -16.19892 -15.79488 -15.19431 -14.91211 -14.80604 -14.50149 -14.46273 -14.43553 -14.25924 -14.17571 -14.15076 -13.24067 -13.03953 -12.97415 -12.94374 -12.14049 -11.77371 -11.56547 -11.14514 -11.13249 -10.92306 -10.78151 -10.51992 -10.26708 -9.59118 -9.42600 -8.75567 -8.41460 -8.10146 -6.35590 -4.44586 1.57829 2.73499 2.81355 3.16575 3.25927 3.28780 3.50803 3.89087 3.93209 4.21898 4.49956 4.73761 4.83198 4.92859 5.21819 5.54820 5.62415 5.69705 5.87208 6.03776 6.36950 6.62572 6.73133 6.78656 7.14876 7.26263 7.65921 7.89412 7.97715 8.43584 8.59869 9.20581 9.30341 10.72367 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.003876 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.948177 B = 7222.946031 C = 7470.138075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.094 3.906 13 N -0.606 5.606 14 C 0.525 3.475 15 O -0.525 6.525 16 C 0.040 3.960 17 O -0.347 6.347 18 C 0.595 3.405 19 F -0.176 7.176 20 F -0.140 7.140 21 F -0.176 7.176 22 C 0.105 3.895 23 H 0.271 0.729 24 H 0.383 0.617 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -14.156 -4.542 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.154 4.154 12 C -0.029 4.029 13 N -0.341 5.341 14 C 0.310 3.690 15 O -0.401 6.401 16 C -0.039 4.039 17 O -0.269 6.269 18 C 0.503 3.497 19 F -0.158 7.158 20 F -0.121 7.121 21 F -0.158 7.158 22 C -0.016 4.016 23 H 0.081 0.919 24 H 0.234 0.766 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.150 -14.088 -4.997 14.992 hybrid contribution 0.106 1.004 -0.145 1.019 sum 1.256 -13.084 -5.142 14.115 Atomic orbital electron populations 1.69690 1.06028 1.27988 1.49533 1.25075 0.95057 0.99861 0.93255 0.86337 0.80053 0.82653 0.77824 1.19553 1.20729 1.20688 1.21523 0.93751 0.89973 1.52471 0.91372 1.19517 0.86493 0.92188 0.81075 1.86108 1.51848 1.56670 1.44698 1.22786 0.97345 0.94851 1.00465 1.22509 0.92995 0.95348 0.92034 1.48733 1.48024 1.13340 1.24031 1.19200 0.81071 0.87468 0.81239 1.90754 1.39118 1.60707 1.49554 1.22663 0.97485 0.97741 0.85979 1.88421 1.71847 1.21188 1.45474 1.19545 0.74239 0.80117 0.75788 1.93263 1.87835 1.73726 1.61008 1.93273 1.76538 1.94414 1.47891 1.93261 1.35298 1.93003 1.94278 1.23134 1.02105 0.77330 0.98984 0.91939 0.76643 0.90221 0.90252 0.91112 0.91843 0.88088 0.88108 0.91121 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 10.96 55.43 0.61 -22.52 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -13.51 8.13 -34.44 -0.28 -13.79 16 8 H 0.07 1.68 7.78 -52.48 -0.41 1.27 16 9 C 0.25 5.64 0.85 -89.94 -0.08 5.56 16 10 O -0.58 -13.86 13.07 -35.23 -0.46 -14.33 16 11 C -0.12 -2.11 6.24 -24.47 -0.15 -2.26 16 12 C 0.09 1.45 6.69 -2.41 -0.02 1.43 16 13 N -0.61 -11.48 3.32 -170.39 -0.57 -12.04 16 14 C 0.53 9.77 7.93 -10.98 -0.09 9.69 16 15 O -0.52 -12.13 16.83 -14.35 -0.24 -12.37 16 16 C 0.04 0.53 5.14 36.01 0.19 0.71 16 17 O -0.35 -5.06 10.11 -55.14 -0.56 -5.62 16 18 C 0.60 6.94 3.75 101.05 0.38 7.32 16 19 F -0.18 -1.91 16.86 2.25 0.04 -1.88 16 20 F -0.14 -1.66 17.53 2.25 0.04 -1.62 16 21 F -0.18 -1.90 16.86 2.25 0.04 -1.86 16 22 C 0.11 2.41 5.24 -3.07 -0.02 2.40 16 23 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.38 9.39 7.45 45.56 0.34 9.73 16 25 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 29 H 0.10 1.08 7.73 -51.93 -0.40 0.68 16 30 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 31 H 0.07 1.78 7.82 -51.92 -0.41 1.38 16 32 H 0.07 1.75 7.91 -51.93 -0.41 1.33 16 LS Contribution 291.89 15.07 4.40 4.40 Total: -1.00 -28.66 291.89 -4.34 -33.00 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -2.46 Total: 7.17 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -0.16 Total: 12.76 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.04 Total: -34.57 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.26 Total: -32.31 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.12 Total: -5.36 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.66 -4.34 -33.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823532179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.775 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds