Wall clock time and date at job start Wed Apr 15 2020 11:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99807 * 2 1 4 4 H 1.48502 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46835 * 299.99668 * 3 2 1 6 6 H 1.48498 * 109.47264 * 59.99760 * 3 2 1 7 7 C 1.37871 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00429 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.63837 * 298.31604 * 9 7 2 11 11 C 1.55154 * 110.87508 * 175.06206 * 9 7 2 12 12 C 1.55123 * 101.48369 * 205.89992 * 11 9 7 13 13 N 1.47423 * 104.72450 * 37.29852 * 12 11 9 14 14 C 1.34777 * 125.64665 * 155.81937 * 13 12 11 15 15 O 1.21278 * 119.99854 * 179.69389 * 14 13 12 16 16 C 1.50703 * 120.00161 * 359.68696 * 14 13 12 17 17 O 1.42898 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.42902 * 114.00186 * 180.02562 * 17 16 14 19 19 F 1.39902 * 109.46992 * 59.99606 * 18 17 16 20 20 F 1.39902 * 109.47136 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.46751 * 299.99993 * 18 17 16 22 22 C 1.47018 * 108.69955 * 335.54881 * 13 12 11 23 23 H 0.96998 * 120.00401 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00003 * 61.68234 * 10 9 7 25 25 H 1.09002 * 111.00352 * 324.13862 * 11 9 7 26 26 H 1.09006 * 111.00140 * 87.95183 * 11 9 7 27 27 H 1.09003 * 110.49564 * 278.45141 * 12 11 9 28 28 H 1.08999 * 110.34198 * 156.06541 * 12 11 9 29 29 H 1.09002 * 109.47152 * 60.00245 * 16 14 13 30 30 H 1.09001 * 109.46980 * 300.00345 * 16 14 13 31 31 H 1.09008 * 109.87927 * 120.70633 * 22 13 12 32 32 H 1.08995 * 109.87990 * 241.86675 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4503 -2.6175 1.1794 11 6 2.2255 -3.7001 -0.1227 12 6 1.3105 -4.7749 -0.7660 13 7 0.4607 -4.0270 -1.7104 14 6 -0.1466 -4.5418 -2.7979 15 8 -0.8299 -3.8312 -3.5043 16 6 0.0236 -6.0005 -3.1362 17 8 -0.7109 -6.3028 -4.3241 18 6 -0.6165 -7.6685 -4.7342 19 9 -1.1126 -8.4951 -3.7204 20 9 -1.3672 -7.8584 -5.8994 21 9 0.7222 -7.9889 -4.9839 22 6 0.3802 -2.6279 -1.2658 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2277 -1.9333 1.2644 25 1 3.0649 -3.4563 -0.7738 26 1 2.5752 -4.0226 0.8581 27 1 0.6976 -5.2591 -0.0057 28 1 1.9099 -5.5136 -1.2981 29 1 -0.3490 -6.6103 -2.3132 30 1 1.0800 -6.2150 -3.2981 31 1 0.7611 -1.9686 -2.0458 32 1 -0.6534 -2.3719 -1.0331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823532179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:51 Heat of formation + Delta-G solvation = -310.063194 kcal Electronic energy + Delta-G solvation = -22897.494506 eV Core-core repulsion = 18635.140356 eV Total energy + Delta-G solvation = -4262.354150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.25419 -49.00696 -48.91973 -41.25623 -39.53288 -38.48527 -36.14090 -34.23685 -32.09847 -30.38848 -29.23618 -26.96993 -25.85322 -24.22403 -21.52105 -20.85892 -20.59257 -20.06303 -19.61561 -19.11205 -18.02980 -17.51343 -17.21962 -16.75994 -16.18218 -15.98822 -15.72197 -15.57405 -15.44661 -15.34865 -15.09170 -15.07270 -14.77692 -14.76598 -14.56174 -14.13869 -13.63255 -13.51120 -13.24884 -12.88748 -12.53498 -12.34087 -12.24836 -12.19227 -12.02068 -11.18339 -11.11634 -10.66357 -10.28606 -9.68127 -8.27772 -6.43244 0.58290 1.39741 1.39976 1.43953 1.53739 1.70569 2.27254 2.38285 2.91006 2.99785 3.05678 3.31039 3.77489 3.80927 3.90026 4.08628 4.20690 4.38899 4.61943 4.69151 4.77250 5.01964 5.12969 5.21783 5.37552 5.50718 5.74083 6.05286 6.49554 6.65381 6.98365 7.26791 7.34498 8.78378 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.003876 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.948177 B = 7222.946031 C = 7470.138075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.113 4.113 12 C 0.097 3.903 13 N -0.609 5.609 14 C 0.518 3.482 15 O -0.583 6.583 16 C 0.049 3.951 17 O -0.377 6.377 18 C 0.606 3.394 19 F -0.168 7.168 20 F -0.143 7.143 21 F -0.167 7.167 22 C 0.122 3.878 23 H 0.269 0.731 24 H 0.375 0.625 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.035 0.965 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -16.365 -4.383 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.393 6.393 11 C -0.150 4.150 12 C -0.024 4.024 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.463 6.463 16 C -0.028 4.028 17 O -0.300 6.300 18 C 0.514 3.486 19 F -0.150 7.150 20 F -0.124 7.124 21 F -0.149 7.149 22 C -0.001 4.001 23 H 0.079 0.921 24 H 0.224 0.776 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.053 0.947 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.736 -16.347 -4.818 17.260 hybrid contribution -0.387 1.678 -0.205 1.734 sum 2.349 -14.669 -5.024 15.682 Atomic orbital electron populations 1.69798 1.07117 1.28392 1.50297 1.25791 0.95744 1.02784 0.93160 0.85460 0.79274 0.79193 0.77443 1.18734 1.21183 1.20423 1.21900 0.94040 0.91392 1.52137 0.91322 1.19750 0.87115 0.93736 0.80338 1.86097 1.51716 1.56228 1.45305 1.22797 0.96920 0.93476 1.01841 1.22758 0.92610 0.94960 0.92100 1.48749 1.48647 1.12021 1.24868 1.20195 0.79528 0.89680 0.80002 1.90724 1.41498 1.62798 1.51319 1.22691 0.99787 0.93446 0.86878 1.88375 1.72465 1.23049 1.46088 1.19271 0.74493 0.79103 0.75717 1.93282 1.87804 1.73290 1.60655 1.93272 1.76721 1.94310 1.48144 1.93281 1.34618 1.92811 1.94236 1.22580 0.99663 0.79668 0.98235 0.92140 0.77606 0.89507 0.88847 0.89759 0.86374 0.84626 0.84285 0.94687 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 10.96 21.44 0.24 -48.86 16 2 C 0.03 1.34 5.28 84.65 0.45 1.79 16 3 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.56 -28.12 8.13 25.60 0.21 -27.91 16 8 H 0.07 3.37 7.78 -2.91 -0.02 3.35 16 9 C 0.23 10.53 0.85 -10.35 -0.01 10.52 16 10 O -0.59 -28.00 13.07 -148.98 -1.95 -29.95 16 11 C -0.11 -3.80 6.24 32.06 0.20 -3.60 16 12 C 0.10 2.61 6.69 86.93 0.58 3.19 16 13 N -0.61 -22.33 3.32 -811.38 -2.70 -25.03 16 14 C 0.52 18.70 7.93 87.66 0.69 19.39 16 15 O -0.58 -27.57 16.83 16.01 0.27 -27.30 16 16 C 0.05 1.13 5.14 71.24 0.37 1.49 16 17 O -0.38 -10.11 10.11 -129.94 -1.31 -11.42 16 18 C 0.61 12.41 3.75 113.37 0.43 12.83 16 19 F -0.17 -3.09 16.86 44.97 0.76 -2.33 16 20 F -0.14 -3.13 17.53 44.97 0.79 -2.34 16 21 F -0.17 -3.02 16.86 44.97 0.76 -2.26 16 22 C 0.12 5.73 5.24 86.73 0.45 6.19 16 23 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 24 H 0.37 19.00 7.45 -74.06 -0.55 18.45 16 25 H 0.09 2.78 8.04 -2.39 -0.02 2.77 16 26 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.12 1.97 7.48 -2.39 -0.02 1.95 16 29 H 0.14 2.21 7.73 -2.39 -0.02 2.19 16 30 H 0.14 2.15 7.44 -2.39 -0.02 2.13 16 31 H 0.03 1.85 7.82 -2.38 -0.02 1.84 16 32 H 0.03 1.76 7.91 -2.39 -0.02 1.74 16 Total: -1.00 -65.61 291.89 2.87 -62.73 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.63 Total: 19.55 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 3.37 Total: 23.89 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -2.46 Total: -73.89 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -2.99 Total: -68.68 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 2.30 Total: -6.93 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -65.61 2.87 -62.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823532179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -247.329 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -312.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -310.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds