Wall clock time and date at job start Wed Apr 15 2020 11:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99803 * 2 1 4 4 C 1.50701 * 109.47518 * 270.00324 * 3 2 1 5 5 H 1.08004 * 119.99225 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00190 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46995 * 60.00027 * 8 6 4 10 10 H 1.48494 * 109.47293 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47180 * 300.00354 * 8 6 4 12 12 C 1.34771 * 119.99821 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99893 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00448 * 359.97438 * 12 2 1 15 15 S 1.81403 * 109.47268 * 180.02562 * 14 12 2 16 16 C 1.76201 * 102.99849 * 179.97438 * 15 14 12 17 17 C 1.38890 * 120.08725 * 359.95439 * 16 15 14 18 18 C 1.38129 * 119.94815 * 180.02562 * 17 16 15 19 19 C 1.38295 * 120.11144 * 0.02562 * 18 17 16 20 20 C 1.38298 * 120.17224 * 0.02562 * 19 18 17 21 21 C 1.38258 * 120.05674 * 359.97358 * 20 19 18 22 22 F 1.35106 * 120.05825 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.47466 * 269.99693 * 1 2 3 24 24 H 1.08996 * 109.47328 * 29.99506 * 1 2 3 25 25 H 1.09006 * 109.47193 * 149.99932 * 1 2 3 26 26 H 1.09001 * 109.46571 * 30.00675 * 3 2 1 27 27 H 1.09001 * 109.47055 * 150.00083 * 3 2 1 28 28 H 0.97001 * 120.00616 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46967 * 60.00330 * 14 12 2 30 30 H 1.08999 * 109.47129 * 299.99980 * 14 12 2 31 31 H 1.08004 * 120.02607 * 0.04536 * 17 16 15 32 32 H 1.07999 * 119.94866 * 180.27536 * 18 17 16 33 33 H 1.07997 * 119.90794 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.97156 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5523 3.6187 -0.6730 8 14 3.4378 3.4172 -3.4338 9 1 2.1404 3.5939 -4.1345 10 1 4.1801 4.7033 -3.4337 11 1 4.2412 2.3825 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 16 2.5642 -3.8511 -0.0005 16 6 1.5169 -5.2680 0.0002 17 6 0.1366 -5.1136 0.0016 18 6 -0.6818 -6.2263 0.0028 19 6 -0.1291 -7.4940 0.0031 20 6 1.2447 -7.6534 0.0028 21 6 2.0704 -6.5445 0.0016 22 9 3.4125 -6.7001 0.0008 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6083 2.0283 0.5140 27 1 3.1499 1.1385 0.5138 28 1 4.0291 4.4447 -0.8502 29 1 0.7584 -2.5299 -0.8903 30 1 0.7591 -2.5303 0.8897 31 1 -0.2965 -4.1242 0.0015 32 1 -1.7551 -6.1062 -0.0007 33 1 -0.7720 -8.3618 0.0044 34 1 1.6728 -8.6449 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:56 Heat of formation + Delta-G solvation = -47.901594 kcal Electronic energy + Delta-G solvation = -18975.154583 eV Core-core repulsion = 15721.151013 eV Total energy + Delta-G solvation = -3254.003569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.97668 -39.03887 -38.98130 -34.97332 -32.74644 -31.71434 -30.66058 -30.02214 -27.50488 -25.78499 -23.37504 -23.16827 -22.52036 -19.05978 -18.02565 -17.13666 -16.66248 -16.52535 -16.48293 -15.78176 -15.52282 -15.21769 -15.05661 -14.40366 -14.05849 -13.59521 -13.40478 -13.28544 -12.71252 -12.68669 -12.32525 -12.26105 -12.03480 -11.96738 -11.41275 -11.22474 -10.94882 -10.61617 -10.20842 -10.13999 -10.05134 -9.71579 -9.18871 -9.10143 -8.47431 -7.80318 -7.42389 -6.08709 -4.14194 0.81750 0.91299 1.27806 2.32745 3.16681 3.27208 3.30049 3.34898 3.38567 3.78833 4.01955 4.41096 4.45993 4.63224 4.83088 4.94916 4.97968 4.98658 5.17462 5.26258 5.36101 5.52005 5.70833 5.74122 5.79430 5.89285 6.08534 6.09389 6.55872 6.91145 7.34377 7.40683 7.86301 8.16019 8.21561 8.76770 8.93004 9.51086 10.99470 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.003566 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.963146 B = 7849.793522 C = 8171.636543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.521 3.479 13 O -0.521 6.521 14 C -0.152 4.152 15 S -0.006 6.006 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.135 4.135 21 C 0.112 3.888 22 F -0.129 7.129 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.265 0.735 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 -19.560 2.594 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.328 5.328 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.305 3.695 13 O -0.397 6.397 14 C -0.303 4.303 15 S 0.240 5.760 16 C -0.251 4.251 17 C -0.138 4.138 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.155 4.155 21 C 0.086 3.914 22 F -0.108 7.108 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.765 -19.110 2.644 21.623 hybrid contribution -1.220 0.281 -1.003 1.604 sum -10.985 -18.829 1.642 21.861 Atomic orbital electron populations 1.21703 0.81216 1.02783 1.00676 1.48092 1.06305 1.07362 1.70992 1.19362 0.92627 0.77519 0.97741 1.21372 1.37013 1.06441 0.92140 0.92443 1.24930 0.95202 0.96306 0.97565 1.69915 1.38133 1.14345 1.30874 0.86537 0.78401 0.77887 0.84493 1.20219 1.21103 1.20078 1.19256 0.87776 0.83860 0.78615 1.90738 1.13179 1.86367 1.49444 1.24019 1.02593 0.96699 1.06999 1.86642 1.07074 0.91863 1.90407 1.22413 0.98410 0.97680 1.06582 1.21109 0.90937 1.00055 1.01654 1.21125 1.00077 0.92105 0.99580 1.20998 0.93931 0.97713 1.00069 1.21075 0.93961 0.97711 1.02789 1.17084 0.77539 0.92341 1.04472 1.91535 1.29339 1.96198 1.93692 0.93389 0.90304 0.92600 0.94655 0.93614 0.92549 0.86902 0.87045 0.84979 0.85110 0.84959 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.24 59.85 0.61 1.79 16 2 N -0.59 -12.22 2.86 -182.95 -0.52 -12.75 16 3 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 4 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 10.67 7.69 -10.99 -0.08 10.59 16 13 O -0.52 -13.17 15.44 5.55 0.09 -13.08 16 14 C -0.15 -2.20 3.37 36.00 0.12 -2.08 16 15 S -0.01 -0.09 20.67 -107.50 -2.22 -2.31 16 16 C -0.14 -1.77 6.11 -39.01 -0.24 -2.01 16 17 C -0.11 -1.15 9.36 -39.38 -0.37 -1.52 16 18 C -0.11 -0.88 10.04 -39.60 -0.40 -1.28 16 19 C -0.11 -0.82 10.04 -39.54 -0.40 -1.22 16 20 C -0.14 -1.27 10.02 -39.55 -0.40 -1.67 16 21 C 0.11 1.41 7.28 -39.24 -0.29 1.12 16 22 F -0.13 -1.84 16.76 2.25 0.04 -1.80 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 25 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 26 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.11 1.38 7.01 -51.92 -0.36 1.02 16 30 H 0.11 1.29 7.71 -51.92 -0.40 0.88 16 31 H 0.13 1.13 5.88 -52.48 -0.31 0.82 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -33.82 313.07 -7.94 -41.76 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.87 Total: -4.05 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.88 Total: -3.55 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.21 Total: -38.45 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.22 Total: -2.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.82 -7.94 -41.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.143 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds