Wall clock time and date at job start Wed Apr 15 2020 11:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99803 * 2 1 4 4 C 1.50701 * 109.47518 * 270.00324 * 3 2 1 5 5 H 1.08004 * 119.99225 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00190 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46995 * 60.00027 * 8 6 4 10 10 H 1.48494 * 109.47293 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47180 * 300.00354 * 8 6 4 12 12 C 1.34771 * 119.99821 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99893 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00448 * 359.97438 * 12 2 1 15 15 S 1.81403 * 109.47268 * 180.02562 * 14 12 2 16 16 C 1.76201 * 102.99849 * 179.97438 * 15 14 12 17 17 C 1.38890 * 120.08725 * 359.95439 * 16 15 14 18 18 C 1.38129 * 119.94815 * 180.02562 * 17 16 15 19 19 C 1.38295 * 120.11144 * 0.02562 * 18 17 16 20 20 C 1.38298 * 120.17224 * 0.02562 * 19 18 17 21 21 C 1.38258 * 120.05674 * 359.97358 * 20 19 18 22 22 F 1.35106 * 120.05825 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.47466 * 269.99693 * 1 2 3 24 24 H 1.08996 * 109.47328 * 29.99506 * 1 2 3 25 25 H 1.09006 * 109.47193 * 149.99932 * 1 2 3 26 26 H 1.09001 * 109.46571 * 30.00675 * 3 2 1 27 27 H 1.09001 * 109.47055 * 150.00083 * 3 2 1 28 28 H 0.97001 * 120.00616 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46967 * 60.00330 * 14 12 2 30 30 H 1.08999 * 109.47129 * 299.99980 * 14 12 2 31 31 H 1.08004 * 120.02607 * 0.04536 * 17 16 15 32 32 H 1.07999 * 119.94866 * 180.27536 * 18 17 16 33 33 H 1.07997 * 119.90794 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.97156 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5523 3.6187 -0.6730 8 14 3.4378 3.4172 -3.4338 9 1 2.1404 3.5939 -4.1345 10 1 4.1801 4.7033 -3.4337 11 1 4.2412 2.3825 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 16 2.5642 -3.8511 -0.0005 16 6 1.5169 -5.2680 0.0002 17 6 0.1366 -5.1136 0.0016 18 6 -0.6818 -6.2263 0.0028 19 6 -0.1291 -7.4940 0.0031 20 6 1.2447 -7.6534 0.0028 21 6 2.0704 -6.5445 0.0016 22 9 3.4125 -6.7001 0.0008 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6083 2.0283 0.5140 27 1 3.1499 1.1385 0.5138 28 1 4.0291 4.4447 -0.8502 29 1 0.7584 -2.5299 -0.8903 30 1 0.7591 -2.5303 0.8897 31 1 -0.2965 -4.1242 0.0015 32 1 -1.7551 -6.1062 -0.0007 33 1 -0.7720 -8.3618 0.0044 34 1 1.6728 -8.6449 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:55 Heat of formation + Delta-G solvation = -69.209403 kcal Electronic energy + Delta-G solvation = -18976.078559 eV Core-core repulsion = 15721.151013 eV Total energy + Delta-G solvation = -3254.927545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.93725 -40.67342 -39.71276 -36.70211 -34.80624 -32.59350 -31.53159 -31.27235 -29.22206 -27.31036 -24.91147 -24.11017 -23.55507 -20.49691 -19.09234 -18.73468 -18.12250 -17.93400 -17.37106 -17.04878 -16.83559 -16.61828 -16.25738 -15.89600 -15.01166 -14.78219 -14.67251 -14.31224 -14.13278 -13.92542 -13.70873 -13.49260 -13.36227 -13.17698 -12.95904 -12.81757 -12.56006 -12.22994 -12.10220 -11.75707 -11.19618 -10.86876 -10.85763 -10.66154 -9.85157 -9.51883 -8.53721 -8.24895 -6.39942 0.05985 0.17300 0.18920 1.29080 1.35669 1.40513 1.47317 1.63391 2.23727 2.40432 2.57208 3.05231 3.23423 3.50830 3.75740 3.90549 4.03495 4.04855 4.31384 4.36014 4.41521 4.67253 4.70500 4.92718 4.97243 4.97964 5.06847 5.19004 5.25820 5.42413 5.50330 5.76928 5.87685 6.01858 6.58304 6.69808 7.20031 7.35026 8.82244 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.003566 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.963146 B = 7849.793522 C = 8171.636543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.601 5.601 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.510 3.490 13 O -0.583 6.583 14 C -0.120 4.120 15 S -0.095 6.095 16 C -0.147 4.147 17 C -0.116 4.116 18 C -0.101 4.101 19 C -0.093 4.093 20 C -0.136 4.136 21 C 0.078 3.922 22 F -0.151 7.151 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.030 0.970 27 H -0.003 1.003 28 H 0.268 0.732 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -21.439 1.682 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.181 1.181 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.296 3.704 13 O -0.464 6.464 14 C -0.271 4.271 15 S 0.149 5.851 16 C -0.260 4.260 17 C -0.140 4.140 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.156 4.156 21 C 0.052 3.948 22 F -0.129 7.129 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.048 0.952 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.691 -21.023 1.738 25.148 hybrid contribution -0.128 0.732 -0.663 0.996 sum -13.819 -20.291 1.075 24.573 Atomic orbital electron populations 1.22070 0.77194 1.04525 1.03168 1.48079 1.08754 1.05737 1.70664 1.18810 0.91195 0.79997 0.96159 1.21681 1.37175 1.06622 0.93029 0.92684 1.25858 0.94821 0.96419 1.02014 1.70037 1.38784 1.14808 1.33134 0.85474 0.78955 0.77310 0.79129 1.18149 1.20327 1.20553 1.20209 0.87484 0.85614 0.77050 1.90707 1.16218 1.87526 1.51912 1.23779 1.01238 0.91921 1.10123 1.86955 1.10864 0.95292 1.91942 1.22267 0.98943 0.95557 1.09282 1.21452 0.89678 1.01965 1.00890 1.21606 1.01726 0.91315 0.97420 1.21527 0.93361 0.99188 0.97220 1.21414 0.94695 0.97544 1.01979 1.17600 0.77178 0.93501 1.06477 1.91475 1.31003 1.96336 1.94121 0.90455 0.91086 0.88372 0.95166 0.98459 0.92324 0.83819 0.83306 0.83130 0.81379 0.81140 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.24 127.77 1.31 3.22 16 2 N -0.60 -24.68 2.86 -851.13 -2.43 -27.11 16 3 C 0.26 13.93 5.16 85.63 0.44 14.37 16 4 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -56.37 13.29 21.44 0.28 -56.09 16 8 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C 0.51 21.14 7.69 87.66 0.67 21.81 16 13 O -0.58 -31.20 15.44 -3.04 -0.05 -31.25 16 14 C -0.12 -3.28 3.37 71.24 0.24 -3.04 16 15 S -0.09 -3.11 20.67 -56.49 -1.17 -4.28 16 16 C -0.15 -3.65 6.11 22.64 0.14 -3.51 16 17 C -0.12 -1.95 9.36 22.40 0.21 -1.74 16 18 C -0.10 -1.12 10.04 22.26 0.22 -0.89 16 19 C -0.09 -0.99 10.04 22.30 0.22 -0.77 16 20 C -0.14 -2.23 10.02 22.29 0.22 -2.00 16 21 C 0.08 1.92 7.28 22.49 0.16 2.09 16 22 F -0.15 -4.50 16.76 44.97 0.75 -3.75 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 25 H 0.10 1.76 6.44 -2.38 -0.02 1.75 16 26 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 27 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.14 3.01 7.01 -2.39 -0.02 2.99 16 30 H 0.15 2.91 7.71 -2.39 -0.02 2.89 16 31 H 0.15 1.85 5.88 -2.91 -0.02 1.83 16 32 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -80.85 313.07 5.08 -75.77 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.11 Total: 0.42 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 4.55 Total: -0.77 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.15 Total: -83.20 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.75 Total: -3.75 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.17 Total: -4.28 kcal Total: -80.85 5.08 -75.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.558 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds