Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47147 * 149.29601 * 3 2 1 5 5 C 1.36936 * 119.99704 * 273.40272 * 4 3 2 6 6 H 1.07999 * 119.99862 * 186.58586 * 5 4 3 7 7 C 1.38813 * 120.00241 * 6.59460 * 5 4 3 8 8 N 1.31618 * 119.99840 * 25.23892 * 7 5 4 9 9 Si 1.86804 * 119.99947 * 205.24402 * 7 5 4 10 10 H 1.48505 * 109.46882 * 59.99758 * 9 7 5 11 11 H 1.48497 * 109.46758 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47035 * 299.99774 * 9 7 5 13 13 S 1.65599 * 120.00275 * 93.40203 * 4 3 2 14 14 O 1.42091 * 106.40389 * 156.46311 * 13 4 3 15 15 O 1.42109 * 106.40199 * 23.53880 * 13 4 3 16 16 C 1.76198 * 107.21673 * 270.00371 * 13 4 3 17 17 C 1.34672 * 126.59275 * 270.16057 * 16 13 4 18 18 N 1.34125 * 108.02321 * 180.28486 * 17 16 13 19 19 C 1.30503 * 109.25676 * 359.73093 * 18 17 16 20 20 C 1.50695 * 125.65205 * 179.97438 * 19 18 17 21 21 N 1.35043 * 108.69971 * 0.02562 * 19 18 17 22 22 C 1.46498 * 126.39943 * 180.02562 * 21 19 18 23 23 H 4.40637 * 5.51355 * 180.02562 * 4 1 2 24 24 H 1.08999 * 109.47484 * 29.29388 * 3 2 1 25 25 H 1.09002 * 109.47226 * 269.29569 * 3 2 1 26 26 H 0.96998 * 119.99291 * 180.02562 * 8 7 5 27 27 H 1.08003 * 125.98513 * 0.05580 * 17 16 13 28 28 H 1.08994 * 109.47721 * 270.04676 * 20 19 18 29 29 H 1.09007 * 109.46999 * 30.04922 * 20 19 18 30 30 H 1.08997 * 109.47160 * 150.04507 * 20 19 18 31 31 H 1.09002 * 109.47403 * 90.01819 * 22 21 19 32 32 H 1.09001 * 109.46852 * 210.01879 * 22 21 19 33 33 H 1.08998 * 109.46981 * 330.01859 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1885 -0.7053 5 6 3.2957 1.1592 -2.0647 6 1 3.7543 1.9951 -2.5720 7 6 2.8701 0.0553 -2.7908 8 7 1.9083 -0.7105 -2.3209 9 14 3.6626 -0.3433 -4.4348 10 1 5.1155 -0.5808 -4.2392 11 1 3.0345 -1.5625 -5.0043 12 1 3.4683 0.7960 -5.3672 13 16 3.4895 2.5665 0.1415 14 8 4.4135 3.2979 -0.6523 15 8 3.7625 2.1587 1.4751 16 6 2.0172 3.5322 0.2082 17 6 1.6265 4.4629 -0.6834 18 7 0.4566 4.9704 -0.2678 19 6 0.1046 4.3855 0.8444 20 6 -1.1481 4.6747 1.6306 21 7 1.0494 3.4789 1.1747 22 6 1.0422 2.6049 2.3504 23 1 -1.0501 -0.0002 0.0004 24 1 3.0098 -0.8954 -0.5028 25 1 3.0094 0.0135 1.0276 26 1 1.6113 -1.4821 -2.8281 27 1 2.1633 4.7527 -1.5746 28 1 -0.9479 5.4629 2.3563 29 1 -1.9369 4.9980 0.9513 30 1 -1.4658 3.7722 2.1529 31 1 0.5392 1.6696 2.1049 32 1 2.0680 2.3967 2.6546 33 1 0.5142 3.0980 3.1665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334973182.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = 61.314860 kcal Electronic energy + Delta-G solvation = -21157.068717 eV Core-core repulsion = 17927.721090 eV Total energy + Delta-G solvation = -3229.347627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44338 -36.45348 -36.02542 -34.54588 -33.44920 -32.16264 -31.45110 -31.25803 -27.02340 -26.72226 -26.14910 -23.95122 -21.30854 -19.61860 -18.61167 -18.06344 -17.27514 -16.68724 -16.37569 -15.43519 -15.06096 -14.74278 -14.50035 -13.69539 -13.47421 -13.32365 -13.11129 -12.96346 -12.60550 -12.45190 -12.15702 -12.10498 -11.92974 -11.36261 -11.05195 -10.89806 -10.76961 -10.57952 -10.44496 -10.37347 -9.83903 -9.46501 -9.35155 -9.09629 -8.98403 -8.43485 -8.01794 -6.71605 -4.05938 1.54539 2.27104 3.05611 3.09686 3.16528 3.27762 3.51359 3.72154 3.91293 4.02807 4.48508 4.59224 4.75531 4.94683 5.09835 5.25927 5.42510 5.50919 5.55455 5.65463 5.78446 5.90706 5.96714 6.15518 6.33153 6.60361 6.72540 6.87085 7.03136 7.15731 7.22265 7.64476 8.05655 8.44124 8.47252 8.76818 8.87357 10.19349 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.007712 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.388197 B = 3629.856038 C = 3841.332049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.109 4.109 3 C 0.232 3.768 4 N -0.785 5.785 5 C -0.234 4.234 6 H 0.126 0.874 7 C 0.029 3.971 8 N -0.813 5.813 9 Si 0.935 3.065 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.266 1.266 13 S 2.534 3.466 14 O -0.975 6.975 15 O -1.002 7.002 16 C -0.559 4.559 17 C 0.062 3.938 18 N -0.506 5.506 19 C 0.205 3.795 20 C -0.065 4.065 21 N -0.400 5.400 22 C 0.044 3.956 23 H 0.195 0.805 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.279 0.721 27 H 0.174 0.826 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -0.046 5.331 6.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.112 4.112 3 C 0.107 3.893 4 N -0.606 5.606 5 C -0.384 4.384 6 H 0.144 0.856 7 C -0.185 4.185 8 N -0.451 5.451 9 Si 0.759 3.241 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.191 1.191 13 S 2.630 3.370 14 O -0.964 6.964 15 O -0.991 6.991 16 C -0.748 4.748 17 C -0.090 4.090 18 N -0.226 5.226 19 C -0.059 4.059 20 C -0.123 4.123 21 N -0.080 5.080 22 C -0.099 4.099 23 H 0.212 0.788 24 H 0.135 0.865 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.191 0.809 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.657 0.773 5.711 6.825 hybrid contribution -0.650 -0.550 -0.684 1.092 sum -4.307 0.223 5.027 6.624 Atomic orbital electron populations 1.24173 0.95263 1.02563 1.06605 1.23380 0.94518 0.98274 0.95037 1.18561 0.83875 0.90944 0.95922 1.55698 1.70777 1.18126 1.16042 1.20258 1.30210 1.05126 0.82846 0.85628 1.25686 0.95064 0.97544 1.00221 1.70217 1.20863 1.15539 1.38499 0.85833 0.79816 0.78452 0.79977 1.18980 1.20560 1.19103 1.12437 0.77845 0.72809 0.73892 1.93363 1.61391 1.72581 1.69068 1.93246 1.85807 1.81791 1.38279 1.35794 1.19414 1.20655 0.98934 1.22061 0.93016 0.94786 0.99176 1.70161 1.14272 1.27636 1.10510 1.23544 0.94651 0.92201 0.95473 1.20133 0.91430 1.02109 0.98655 1.44771 1.15857 1.28667 1.18715 1.22543 1.07361 0.94205 0.85746 0.78831 0.86490 0.90072 0.91042 0.80914 0.90514 0.89449 0.90962 0.90014 0.86388 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.29 18.67 29.55 0.55 -4.73 16 2 C -0.11 -2.31 10.76 -37.12 -0.40 -2.71 16 3 C 0.23 4.91 5.45 -6.83 -0.04 4.88 16 4 N -0.79 -18.04 2.88 -62.77 -0.18 -18.22 16 5 C -0.23 -5.56 9.48 -15.06 -0.14 -5.70 16 6 H 0.13 2.97 7.22 -52.49 -0.38 2.59 16 7 C 0.03 0.64 4.93 -17.43 -0.09 0.56 16 8 N -0.81 -18.59 8.96 55.49 0.50 -18.10 16 9 Si 0.93 17.85 29.62 -169.99 -5.04 12.82 16 10 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 11 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 S 2.53 58.56 5.75 -107.50 -0.62 57.95 16 14 O -0.98 -24.76 16.64 -57.17 -0.95 -25.71 16 15 O -1.00 -23.06 13.96 -57.17 -0.80 -23.86 16 16 C -0.56 -12.46 7.02 -16.56 -0.12 -12.58 16 17 C 0.06 1.40 11.64 -17.81 -0.21 1.19 16 18 N -0.51 -10.87 11.25 -10.82 -0.12 -10.99 16 19 C 0.20 3.86 7.90 -155.42 -1.23 2.63 16 20 C -0.06 -0.83 9.97 36.00 0.36 -0.47 16 21 N -0.40 -7.83 3.15 -120.31 -0.38 -8.21 16 22 C 0.04 0.70 10.53 59.85 0.63 1.33 16 23 H 0.19 3.24 7.80 -54.08 -0.42 2.82 16 24 H 0.12 2.49 6.42 -51.93 -0.33 2.16 16 25 H 0.08 1.57 6.94 -51.93 -0.36 1.21 16 26 H 0.28 6.05 8.31 -40.82 -0.34 5.71 16 27 H 0.17 3.65 8.06 -52.48 -0.42 3.22 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 31 H 0.08 1.27 7.03 -51.93 -0.37 0.90 16 32 H 0.12 2.05 5.62 -51.93 -0.29 1.76 16 33 H 0.08 0.97 7.65 -51.93 -0.40 0.57 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -30.19 298.93 -7.11 -37.30 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.35 Total: 8.13 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.68 Total: -15.61 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.18 Total: -55.52 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.75 Total: -49.57 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.04 Total: 12.82 kcal Atomic # 16 Polarization: 58.56 SS G_CDS: -0.62 Total: 57.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.19 -7.11 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334973182.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.619 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds