Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00019 * 3 2 1 5 5 H 1.48503 * 109.47014 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.47445 * 149.99324 * 3 2 1 7 7 C 1.38809 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00399 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99899 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99981 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47216 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99802 * 179.97438 * 13 12 11 15 15 O 1.21547 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.47854 * 119.99701 * 179.97438 * 14 13 12 17 17 C 1.39549 * 120.55274 * 0.02562 * 16 14 13 18 18 N 1.31664 * 120.59564 * 179.97438 * 17 16 14 19 19 C 1.31950 * 121.89042 * 0.02562 * 18 17 16 20 20 C 1.38427 * 121.06558 * 359.97438 * 19 18 17 21 21 Cl 1.73592 * 120.36071 * 180.02562 * 20 19 18 22 22 C 1.38513 * 119.27370 * 359.97438 * 20 19 18 23 23 H 0.96995 * 120.00347 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00424 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47097 * 60.00236 * 10 9 7 26 26 H 1.08992 * 109.47551 * 300.00230 * 10 9 7 27 27 H 1.08996 * 109.47161 * 59.99724 * 11 10 9 28 28 H 1.09000 * 109.46708 * 300.00183 * 11 10 9 29 29 H 1.08996 * 109.47675 * 59.99556 * 12 11 10 30 30 H 1.09000 * 109.47038 * 299.99499 * 12 11 10 31 31 H 0.96993 * 120.00007 * 359.97438 * 13 12 11 32 32 H 1.07996 * 119.70557 * 359.95484 * 17 16 14 33 33 H 1.08001 * 119.46351 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.85901 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6165 -2.1912 0.0024 12 6 6.3814 -3.5162 0.0017 13 7 7.8218 -3.2484 0.0036 14 6 8.6976 -4.2728 0.0039 15 8 8.2925 -5.4188 0.0031 16 6 10.1512 -4.0026 0.0052 17 6 10.6290 -2.6914 0.0066 18 7 11.9233 -2.4498 0.0083 19 6 12.8141 -3.4232 0.0082 20 6 12.4217 -4.7507 0.0068 21 17 13.6093 -6.0168 0.0073 22 6 11.0710 -5.0576 0.0061 23 1 -0.4850 0.8400 -0.0004 24 1 3.8646 -0.3621 0.0014 25 1 3.8492 -3.0422 -0.8892 26 1 3.8486 -3.0426 0.8907 27 1 5.8791 -1.6200 0.8927 28 1 5.8804 -1.6192 -0.8872 29 1 6.1188 -4.0870 -0.8889 30 1 6.1176 -4.0885 0.8911 31 1 8.1451 -2.3339 0.0046 32 1 9.9309 -1.8674 0.0060 33 1 13.8665 -3.1802 0.0092 34 1 10.7362 -6.0845 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168350134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = 2.864834 kcal Electronic energy + Delta-G solvation = -18378.250266 eV Core-core repulsion = 15144.324350 eV Total energy + Delta-G solvation = -3233.925916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15905 -39.43927 -37.22408 -36.33598 -34.67550 -33.15210 -32.43160 -31.59405 -29.99116 -26.21298 -24.59504 -24.15741 -22.30584 -21.48314 -20.85627 -18.69000 -17.63207 -17.44523 -17.10551 -15.98059 -15.90150 -15.81654 -15.05963 -14.61033 -14.29585 -14.15701 -13.82104 -13.54847 -13.21369 -12.84892 -12.71631 -12.57494 -12.09568 -11.81221 -11.28155 -11.10713 -10.99836 -10.77300 -10.65158 -10.44691 -10.19738 -10.00955 -9.65396 -9.62907 -9.31561 -8.94131 -7.28572 -5.80015 -3.16610 -0.05227 0.39831 1.37757 2.36924 2.74916 3.19484 3.33635 3.35909 3.42281 3.65216 4.03276 4.14476 4.20068 4.44066 4.55402 4.65562 4.85763 5.10435 5.21146 5.31134 5.39892 5.49952 5.68191 5.70697 5.83153 5.86153 6.04452 6.15745 6.62128 6.65169 7.08062 7.13024 7.80542 7.95638 8.38592 9.17068 9.89042 10.08133 11.38248 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.002452 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.208975 B =11416.370005 C =12051.831045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.143 4.143 12 C 0.122 3.878 13 N -0.719 5.719 14 C 0.561 3.439 15 O -0.528 6.528 16 C -0.171 4.171 17 C 0.138 3.862 18 N -0.469 5.469 19 C 0.135 3.865 20 C -0.098 4.098 21 Cl -0.044 7.044 22 C -0.008 4.008 23 H 0.260 0.740 24 H 0.361 0.639 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.532 -8.148 0.011 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.346 3.654 15 O -0.405 6.405 16 C -0.176 4.176 17 C -0.020 4.020 18 N -0.177 5.177 19 C -0.022 4.022 20 C -0.127 4.127 21 Cl -0.015 7.015 22 C -0.035 4.035 23 H 0.070 0.930 24 H 0.193 0.807 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 29.347 -8.303 0.015 30.499 hybrid contribution 0.491 0.734 0.009 0.883 sum 29.838 -7.569 0.024 30.783 Atomic orbital electron populations 1.69701 1.05110 1.25888 1.57391 1.24701 0.95285 0.97301 1.01972 0.86511 0.79138 0.84871 0.77744 1.21057 1.21687 1.20379 1.19061 0.80538 0.94837 1.43213 0.89136 1.42679 1.04135 1.02116 1.91328 1.20492 0.87475 0.89594 0.99167 1.22015 0.97309 0.96057 1.02766 1.21438 0.77270 0.98243 1.03176 1.45973 1.07462 1.09022 1.74557 1.17866 0.84978 0.85399 0.77140 1.90820 1.79541 1.20866 1.49320 1.21067 0.94947 0.94743 1.06841 1.23180 0.92499 0.94981 0.91373 1.67890 1.02345 1.35043 1.12397 1.23071 1.00652 0.86306 0.92181 1.22034 0.91326 0.91616 1.07724 1.98409 1.55827 1.50487 1.96823 1.21700 0.90011 1.01298 0.90525 0.93000 0.80672 0.95099 0.95160 0.91178 0.91174 0.90686 0.90706 0.76451 0.81462 0.81135 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -17.53 5.41 -59.91 -0.32 -17.85 16 10 C 0.16 2.90 6.26 -4.04 -0.03 2.88 16 11 C -0.14 -1.85 5.44 -26.73 -0.15 -2.00 16 12 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 13 N -0.72 -6.85 5.51 -61.25 -0.34 -7.19 16 14 C 0.56 6.19 7.78 -12.33 -0.10 6.10 16 15 O -0.53 -7.75 16.42 5.32 0.09 -7.66 16 16 C -0.17 -1.51 5.89 -104.83 -0.62 -2.12 16 17 C 0.14 1.03 10.71 -17.13 -0.18 0.85 16 18 N -0.47 -3.84 10.34 -12.89 -0.13 -3.97 16 19 C 0.14 0.93 10.97 -17.43 -0.19 0.74 16 20 C -0.10 -0.72 6.34 -39.41 -0.25 -0.97 16 21 Cl -0.04 -0.29 28.98 -51.86 -1.50 -1.80 16 22 C -0.01 -0.07 9.52 -38.83 -0.37 -0.44 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.36 8.02 5.53 -40.82 -0.23 7.79 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.40 2.69 6.54 -40.82 -0.27 2.43 16 32 H 0.17 0.81 6.42 -52.49 -0.34 0.47 16 33 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.16 1.34 7.74 -52.48 -0.41 0.94 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -33.96 313.17 -7.37 -41.34 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.79 Total: 4.54 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.15 Total: -0.69 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.02 Total: -57.45 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.66 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.96 -7.37 -41.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168350134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.201 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds