Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00019 * 3 2 1 5 5 H 1.48503 * 109.47014 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.47445 * 149.99324 * 3 2 1 7 7 C 1.38809 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00399 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99899 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99981 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47286 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47216 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47087 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99802 * 179.97438 * 13 12 11 15 15 O 1.21547 * 120.00290 * 359.97438 * 14 13 12 16 16 C 1.47854 * 119.99701 * 179.97438 * 14 13 12 17 17 C 1.39549 * 120.55274 * 0.02562 * 16 14 13 18 18 N 1.31664 * 120.59564 * 179.97438 * 17 16 14 19 19 C 1.31950 * 121.89042 * 0.02562 * 18 17 16 20 20 C 1.38427 * 121.06558 * 359.97438 * 19 18 17 21 21 Cl 1.73592 * 120.36071 * 180.02562 * 20 19 18 22 22 C 1.38513 * 119.27370 * 359.97438 * 20 19 18 23 23 H 0.96995 * 120.00347 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00424 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47097 * 60.00236 * 10 9 7 26 26 H 1.08992 * 109.47551 * 300.00230 * 10 9 7 27 27 H 1.08996 * 109.47161 * 59.99724 * 11 10 9 28 28 H 1.09000 * 109.46708 * 300.00183 * 11 10 9 29 29 H 1.08996 * 109.47675 * 59.99556 * 12 11 10 30 30 H 1.09000 * 109.47038 * 299.99499 * 12 11 10 31 31 H 0.96993 * 120.00007 * 359.97438 * 13 12 11 32 32 H 1.07996 * 119.70557 * 359.95484 * 17 16 14 33 33 H 1.08001 * 119.46351 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.85901 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6165 -2.1912 0.0024 12 6 6.3814 -3.5162 0.0017 13 7 7.8218 -3.2484 0.0036 14 6 8.6976 -4.2728 0.0039 15 8 8.2925 -5.4188 0.0031 16 6 10.1512 -4.0026 0.0052 17 6 10.6290 -2.6914 0.0066 18 7 11.9233 -2.4498 0.0083 19 6 12.8141 -3.4232 0.0082 20 6 12.4217 -4.7507 0.0068 21 17 13.6093 -6.0168 0.0073 22 6 11.0710 -5.0576 0.0061 23 1 -0.4850 0.8400 -0.0004 24 1 3.8646 -0.3621 0.0014 25 1 3.8492 -3.0422 -0.8892 26 1 3.8486 -3.0426 0.8907 27 1 5.8791 -1.6200 0.8927 28 1 5.8804 -1.6192 -0.8872 29 1 6.1188 -4.0870 -0.8889 30 1 6.1176 -4.0885 0.8911 31 1 8.1451 -2.3339 0.0046 32 1 9.9309 -1.8674 0.0060 33 1 13.8665 -3.1802 0.0092 34 1 10.7362 -6.0845 0.0054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168350134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -22.078450 kcal Electronic energy + Delta-G solvation = -18379.331888 eV Core-core repulsion = 15144.324350 eV Total energy + Delta-G solvation = -3235.007538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82634 -40.24082 -37.76375 -37.65744 -36.08140 -34.05948 -33.69677 -32.68127 -31.37760 -27.46218 -25.62532 -24.80543 -23.85120 -22.70707 -21.84353 -19.80401 -19.18531 -18.18035 -17.75434 -16.92790 -16.88275 -16.55466 -16.34457 -15.92896 -15.61585 -15.14875 -14.83418 -14.76262 -14.39866 -13.93243 -13.82450 -13.68908 -13.16974 -12.87464 -12.54683 -12.53909 -12.33850 -12.09096 -11.99875 -11.80980 -11.55094 -11.09919 -10.96814 -10.71406 -10.31279 -10.09861 -9.30727 -8.02356 -5.37390 -0.65722 -0.19574 0.82955 1.39542 1.45062 1.52403 1.61797 1.93056 2.50227 2.55148 3.12034 3.28867 3.48618 3.48855 3.55515 3.62314 3.84370 4.09435 4.10298 4.24177 4.30047 4.65803 4.71075 4.72318 4.73761 4.89697 5.14013 5.21128 5.30292 5.33369 5.75727 6.21179 6.35429 6.53647 7.01478 7.08410 7.83044 8.03699 9.19098 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.002452 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.208975 B =11416.370005 C =12051.831045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.241 4.241 8 H 0.053 0.947 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.124 4.124 12 C 0.130 3.870 13 N -0.705 5.705 14 C 0.563 3.437 15 O -0.572 6.572 16 C -0.181 4.181 17 C 0.147 3.853 18 N -0.483 5.483 19 C 0.143 3.857 20 C -0.100 4.100 21 Cl -0.039 7.039 22 C -0.016 4.016 23 H 0.258 0.742 24 H 0.369 0.631 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.417 0.583 32 H 0.195 0.805 33 H 0.197 0.803 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.651 -6.492 0.044 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.372 4.372 8 H 0.071 0.929 9 N -0.405 5.405 10 C 0.026 3.974 11 C -0.162 4.162 12 C 0.006 3.994 13 N -0.357 5.357 14 C 0.350 3.650 15 O -0.453 6.453 16 C -0.187 4.187 17 C -0.011 4.011 18 N -0.191 5.191 19 C -0.015 4.015 20 C -0.129 4.129 21 Cl -0.010 7.010 22 C -0.043 4.043 23 H 0.067 0.933 24 H 0.203 0.797 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.255 0.745 32 H 0.211 0.789 33 H 0.213 0.787 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 32.535 -6.648 0.049 33.207 hybrid contribution -0.468 0.086 -0.006 0.476 sum 32.067 -6.562 0.043 32.731 Atomic orbital electron populations 1.69906 1.07383 1.26862 1.59457 1.25652 0.96263 1.01812 1.02372 0.85291 0.78799 0.78735 0.78218 1.20240 1.22469 1.16765 1.19041 0.82904 0.93474 1.41768 0.92937 1.42651 1.02421 1.04289 1.91107 1.20667 0.90664 0.87520 0.98535 1.21784 0.93298 0.96895 1.04259 1.21184 0.78323 0.97308 1.02568 1.45759 1.06405 1.09772 1.73791 1.18151 0.85918 0.84839 0.76120 1.90801 1.80348 1.22613 1.51491 1.20874 0.93460 0.95606 1.08750 1.23539 0.92831 0.94941 0.89820 1.67992 1.02634 1.35368 1.13134 1.23501 1.01728 0.85822 0.90402 1.22031 0.90916 0.92090 1.07861 1.98413 1.55444 1.50373 1.96804 1.21755 0.90727 1.01153 0.90651 0.93296 0.79709 0.95620 0.95723 0.89710 0.89598 0.91442 0.91494 0.74487 0.78877 0.78662 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.22 13.97 21.65 0.30 -62.91 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.96 44.03 27.74 68.60 1.90 45.93 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.24 -9.66 6.52 99.48 0.65 -9.01 16 7 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.76 -34.00 5.41 -343.45 -1.86 -35.85 16 10 C 0.15 5.35 6.26 86.38 0.54 5.89 16 11 C -0.12 -2.85 5.44 30.59 0.17 -2.68 16 12 C 0.13 2.77 5.67 86.38 0.49 3.26 16 13 N -0.71 -11.78 5.51 -465.98 -2.57 -14.34 16 14 C 0.56 11.75 7.78 86.79 0.68 12.42 16 15 O -0.57 -16.77 16.42 -3.86 -0.06 -16.84 16 16 C -0.18 -2.92 5.89 -20.00 -0.12 -3.04 16 17 C 0.15 1.79 10.71 85.03 0.91 2.70 16 18 N -0.48 -6.56 10.34 -194.68 -2.01 -8.57 16 19 C 0.14 1.61 10.97 84.72 0.93 2.54 16 20 C -0.10 -1.30 6.34 22.38 0.14 -1.16 16 21 Cl -0.04 -0.47 28.98 -2.72 -0.08 -0.55 16 22 C -0.02 -0.25 9.52 22.75 0.22 -0.04 16 23 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 24 H 0.37 15.21 5.53 -92.71 -0.51 14.69 16 25 H 0.03 0.93 8.14 -2.38 -0.02 0.92 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.42 4.10 6.54 -92.71 -0.61 3.50 16 32 H 0.19 1.13 6.42 -2.91 -0.02 1.11 16 33 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.15 2.60 7.74 -2.91 -0.02 2.57 16 Total: -1.00 -74.81 313.17 0.89 -73.92 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.03 Total: 15.77 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.30 Total: 3.45 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.14 Total: -121.68 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.06 Total: -16.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -74.81 0.89 -73.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168350134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.837 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds