Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48497 * 109.46939 * 270.00240 * 3 2 1 5 5 H 1.48506 * 109.46894 * 30.00134 * 3 2 1 6 6 H 1.48503 * 109.47132 * 149.99777 * 3 2 1 7 7 C 1.38956 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00144 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99893 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00163 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00170 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00452 * 180.02562 * 10 9 7 13 13 S 1.81401 * 109.47246 * 179.97438 * 12 10 9 14 14 C 1.76204 * 102.99857 * 179.97438 * 13 12 10 15 15 N 1.31087 * 126.00810 * 359.97438 * 14 13 12 16 16 N 1.40104 * 107.99042 * 179.77804 * 15 14 13 17 17 C 1.31035 * 108.00495 * 0.38280 * 16 15 14 18 18 N 1.38894 * 125.98654 * 179.89392 * 17 16 15 19 19 N 1.36611 * 108.01882 * 359.62549 * 17 16 15 20 20 C 1.46493 * 125.99812 * 180.22326 * 19 17 16 21 21 C 1.53005 * 117.49957 * 197.98267 * 20 19 17 22 22 C 1.53002 * 117.50071 * 129.32255 * 20 19 17 23 23 H 0.97004 * 119.99780 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00203 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47090 * 59.99238 * 12 10 9 26 26 H 1.09003 * 109.46662 * 299.99912 * 12 10 9 27 27 H 0.97001 * 119.99903 * 174.31015 * 18 17 16 28 28 H 0.96999 * 120.00383 * 354.02573 * 18 17 16 29 29 H 1.09004 * 115.55248 * 343.65171 * 20 19 17 30 30 H 1.08998 * 117.49585 * 0.02562 * 21 20 19 31 31 H 1.08998 * 117.50056 * 145.01403 * 21 20 19 32 32 H 1.09000 * 117.49922 * 214.97752 * 22 20 19 33 33 H 1.09001 * 117.49889 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0535 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3709 0.0001 13 16 6.1651 -4.0812 -0.0009 14 6 7.9159 -3.8827 -0.0002 15 7 8.5622 -2.7422 0.0004 16 7 9.9349 -3.0227 0.0061 17 6 10.0822 -4.3248 0.0004 18 7 11.2907 -5.0094 0.0011 19 7 8.8389 -4.8907 -0.0003 20 6 8.5462 -6.3261 -0.0013 21 6 7.1404 -6.7603 -0.4209 22 6 7.5622 -6.8473 1.0480 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3635 0.0004 25 1 5.9233 -1.8581 0.8910 26 1 5.9246 -1.8559 -0.8889 27 1 11.3004 -5.9761 0.0798 28 1 12.1248 -4.5211 -0.0813 29 1 9.3770 -6.9752 -0.2783 30 1 6.4334 -5.9778 -0.6966 31 1 7.0462 -7.6949 -0.9737 32 1 7.7454 -7.8393 1.4610 33 1 7.1329 -6.1222 1.7394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318260121.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = 90.272905 kcal Electronic energy + Delta-G solvation = -19250.230017 eV Core-core repulsion = 16054.430856 eV Total energy + Delta-G solvation = -3195.799161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.95377 -38.40523 -37.58844 -35.00062 -34.12358 -32.00671 -31.81449 -29.87724 -29.09644 -24.55377 -24.01759 -22.90626 -22.22652 -21.21806 -19.55276 -18.51400 -18.21389 -17.41320 -16.35038 -16.03453 -16.00796 -15.53630 -15.07877 -14.87357 -14.67620 -14.02936 -13.44702 -13.33844 -12.71798 -12.41607 -12.10796 -12.04191 -11.89917 -11.56299 -11.26408 -11.20315 -11.13592 -10.81864 -10.62169 -10.04494 -10.00828 -9.67058 -9.63963 -8.91362 -8.78828 -8.28457 -7.43452 -6.38672 -3.91071 1.00005 1.84270 2.17112 2.28772 2.56086 3.02387 3.07273 3.15040 3.21782 3.37635 3.56545 4.05984 4.11331 4.30156 4.46337 4.50101 4.87436 5.12857 5.17855 5.31234 5.34737 5.53564 5.62113 5.65882 5.78888 5.83682 5.88853 6.23635 7.00054 7.12413 7.45776 8.02070 8.16464 8.45746 8.83268 9.31523 9.64984 10.73417 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.003990 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.817354 B = 7015.737822 C = 7865.121125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.877 3.123 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.573 5.573 10 C 0.464 3.536 11 O -0.568 6.568 12 C -0.151 4.151 13 S 0.089 5.911 14 C 0.187 3.813 15 N -0.306 5.306 16 N -0.371 5.371 17 C 0.484 3.516 18 N -0.831 5.831 19 N -0.478 5.478 20 C 0.044 3.956 21 C -0.174 4.174 22 C -0.174 4.174 23 H 0.276 0.724 24 H 0.375 0.625 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.407 0.593 28 H 0.423 0.577 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.523 -12.721 0.142 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.703 3.297 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.248 3.752 11 O -0.452 6.452 12 C -0.302 4.302 13 S 0.316 5.684 14 C -0.195 4.195 15 N -0.139 5.139 16 N -0.211 5.211 17 C 0.119 3.881 18 N -0.390 5.390 19 N -0.184 5.184 20 C -0.061 4.061 21 C -0.213 4.213 22 C -0.213 4.213 23 H 0.086 0.914 24 H 0.208 0.792 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.236 0.764 28 H 0.256 0.744 29 H 0.159 0.841 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.555 -12.463 0.149 23.189 hybrid contribution 1.554 1.011 -0.002 1.854 sum 21.108 -11.452 0.147 24.015 Atomic orbital electron populations 1.69617 1.05688 1.27800 1.48194 1.25048 0.95513 0.98114 0.97124 0.86693 0.79968 0.83815 0.79194 1.19352 1.19950 1.19195 1.19456 0.78802 0.96857 1.48640 0.85957 1.42078 1.07613 1.05950 1.65490 1.18730 0.86024 0.85097 0.85327 1.90587 1.68831 1.30511 1.55257 1.23905 0.99463 0.99135 1.07735 1.86137 0.82344 1.07892 1.92006 1.26881 0.99821 0.87027 1.05762 1.78185 0.96388 1.17817 1.21536 1.78105 1.06878 1.05822 1.30316 1.20868 0.81056 0.89039 0.97145 1.40947 1.02528 1.09084 1.86419 1.45521 1.03487 1.06165 1.63202 1.22000 0.96438 0.79259 1.08425 1.23794 0.94915 1.04390 0.98226 1.23568 1.01099 1.03523 0.93117 0.91382 0.79202 0.87284 0.87230 0.76358 0.74377 0.84114 0.85760 0.86423 0.86975 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.11 13.96 55.50 0.77 -24.34 16 2 C 0.05 1.25 5.50 -17.47 -0.10 1.16 16 3 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.60 10.16 -14.93 -0.15 -8.76 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.57 -13.63 5.09 -10.96 -0.06 -13.68 16 10 C 0.46 10.48 7.80 -10.99 -0.09 10.39 16 11 O -0.57 -14.69 15.44 5.54 0.09 -14.61 16 12 C -0.15 -2.68 6.06 36.01 0.22 -2.46 16 13 S 0.09 1.42 16.33 -107.50 -1.76 -0.33 16 14 C 0.19 2.93 7.91 -88.37 -0.70 2.23 16 15 N -0.31 -5.50 12.29 30.67 0.38 -5.12 16 16 N -0.37 -6.17 12.72 30.38 0.39 -5.78 16 17 C 0.48 6.14 9.14 -318.42 -2.91 3.23 16 18 N -0.83 -5.90 9.08 30.37 0.28 -5.62 16 19 N -0.48 -6.01 3.13 -110.35 -0.35 -6.36 16 20 C 0.04 0.38 6.70 -67.93 -0.46 -0.08 16 21 C -0.17 -1.57 9.67 -26.69 -0.26 -1.83 16 22 C -0.17 -1.44 9.93 -26.69 -0.26 -1.71 16 23 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.37 7.91 5.76 -40.82 -0.24 7.68 16 25 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 26 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 27 H 0.41 1.61 8.09 -40.82 -0.33 1.28 16 28 H 0.42 2.36 8.95 -40.82 -0.37 1.99 16 29 H 0.14 0.71 7.48 -51.93 -0.39 0.32 16 30 H 0.13 1.49 4.28 -26.31 -0.11 1.38 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.11 1.16 7.67 -51.93 -0.40 0.76 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -35.30 299.87 -8.23 -43.53 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.08 Total: 11.04 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -4.70 Total: 2.17 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 1.41 Total: -60.90 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.61 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.76 Total: -0.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.30 -8.23 -43.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318260121.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.801 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds